![]() |
Microscopy Image Browser
1.00
|
Get the 3D volume from the dataset, the wrapper function. More...
Functions | |
function
dataset = | ib_getDataset (type, handles, orient, col_channel, options) |
Get the 3D volume from the dataset, the wrapper function. More... | |
Get the 3D volume from the dataset, the wrapper function.
function dataset = ib_getDataset | ( | type, | |
handles, | |||
orient, | |||
col_channel, | |||
options | |||
) |
Get the 3D volume from the dataset, the wrapper function.
This is a wrapper function, it uses the functions of the imageData class to get the whole 3D dataset at once. When ROIs regions are shown in the axes (handles.roiShowCheck checkbox) the function returns the ROI areas.
type | a type of the image to get, 'image', 'model', 'selection', 'mask', 'everything' (for imageData.model_type=='uint6' only) |
handles | handles structure of im_browser.m |
orient | [optional], can be NaN
|
col_channel | [optional],
|
options | a structure with extra parameters
|
dataset | a cell array with the dataset, format - dataset{roiId}(1:height, 1:width, 1:color, 1:z); roiId=1 when one or no ROI selected. |
Examples:
Referenced by ib_anisotropicDiffusion(), ib_autoBrightness(), ib_contrastCLAHE(), ib_invertImage(), ib_linearContrast(), ib_maskGenerator(), ib_moveLayers(), ib_removeBackground(), ib_segmentation_SmartWatershed(), ib_sizeExclusionFilter(), ib_smoothImage(), imageFilterDoitBtn_Callback(), menuMaskInvert(), menuSelectionInvert(), model_cm_Callback(), ibimageMorphOpsGui>continueBtn_Callback(), ibMorphOpsGui>continueBtn_Callback(), and ManGridBW>startBtn_Callback().