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Microscopy Image Browser v3

Microscopy Image Browser
Getting Started
Getting Started
- Installation
  Installation
  - Enable Java
- Starting MIB
- First dataset
- Basic concepts
- Image layers
- Dataset types
- Configuration files
Resources
Resources
- Features
Release notes
Release notes
- History
Licenses
Licenses
About
About
- Acknowledgements
- Contact and Support
User interface
User interface
- Ribbon
  Ribbon
  - Home
    
    Home
    
    Import from URL / Zarr
    
    Make snapshot
    
    Make video
    
    MIB 3D Viewer
    
    Batch processing
    
    Dataset chunking
    
    Image shuffling
    
    Preferences
  - Dataset
    
    Dataset
    
    Alignment tool
    
    Stitching
    Stitching
    
    Stitching
    
    Stitch inspector
    
    Crop
    
    Resample
    
    Transform
    
    Slice
    
    Bounding box
  - Image
    
    Image
    
    Contrast
    Contrast
    
    Normalize layers
    
    CLAHE
    
    Image filters
    
    -> content aware fill
    
    -> debris removal
    
    -> image arithmetics
    
    -> intensity projection
    
    -> select image frame
    
    -> white balance correction
    
    Morphological ops
  - Model
    
    Model
    
    Stitch 2D instances to 3D
    
    Instance editor
    
    Quantification
  - Mask
    
    Mask
    
    Quantification
  - Selection
    
    Selection
    
    Morphological ops
  - Tools
    
    Tools
    
    Global thresholding
    
    Graphcut
    
    Measure tool
    
    Object separation
    
    Membrane detector
    
    Stereology
    
    Wound healing assay
  - Plugins
    
    Plugins
  - Help
    
    Help
- Quick Access Bar
  Quick Access Bar
- Image Document
  Image Document
- Panels
  Panels
  - Datasets
    
    Datasets
  - Directory contents
    
    Directory contents
  - Segmentation
    
    Segmentation
    
    3D ball
    
    3D lines
    
    Annotations
    
    Brush
    
    BW Thresholding
    
    Deep learning
    
    Drag & Drop materials
    
    Graphcut
    
    Lasso
    
    MagicWand-RegionGrowing
    
    Membrane ClickTracker
    
    Object Picker
    
    Segment Anything Model
    
    Spot
  - Selection and View settings
    
    Selection and View settings
    
    Selection
    
    View settings
    
    Image adjustment
  - ROIs
    
    ROIs
  - Fiji connect
    
    Fiji connect
- Status Bar
  Status Bar
- Key and mouse shortcuts
DeepMIB
DeepMIB
- Networks
- Dirs
- Train
- Predict
- Options
- 2D Instance (SOLOv2)
Plugins
Plugins
- File processing
  File processing
  - Image converter
  - Multi rename tool
- Intensity analysis
  Intensity analysis
  - Triple area intensity
- Organelle analysis
  Organelle analysis
- Plasmodesmata
  Plasmodesmata
  - Cell wall thickness
  - Spacial control points
- Tutorials
  Tutorials
Dev corner
Dev corner

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