Extension | Description | Direction | Based on |
Direct data exchange | |||
MATLAB | Exchange with MATLAB main workspace | Import/Export | MATLAB core |
Fiji/ImageJ | Exchange with Fiji | Import/Export | MIJ |
Imaris | Import from Imaris | Import/Export | IceImarisConnector |
Omero Server | Import from Omero server | Import | OMERO MATLAB bindings |
Web URL | Import images using the web URL | Import | MATLAB core |
System clipboard | Import images from system clipboard | Import | imclipboard |
Own custom readers/writers | |||
AM | Amira Mesh, a common file format with Amira | Import/Export | own |
HDF5 | Hierarchical Data Format 5 | Import/Export | own |
mibImg | Images in MATLAB format used for Deep Learning workflows | Import | own |
MOD | Models for IMOD | Export | own + matTomo |
MRC | Medical Research Council format | Import/Export | own + matTomo |
NRRD | Nearly Raw Raster Data | Import/Export | own + Projects:MATLABSlicerExampleModule and NRRD Format File Reader |
STL | STereoLithography | Export | own + stlwrite |
XML | Fiji Big Data Viewer | Import/Export | own |
MATLAB standard image and video formats | |||
ASF | ASF Video File | Import | MATLAB |
ASX | ASX Video File | Import | MATLAB |
AVI | AVI Video File | Import/Export | MATLAB |
BMP | Windows Bitmap | Import | MATLAB |
CUR | Windows Cursor resources | Import | MATLAB |
FTS, FITS | Flexible Image Transport System | Import | MATLAB |
GIF | Graphics Interchange Format | Import | MATLAB |
HDF | Hierarchical Data Format | Import | MATLAB |
ICO | Windows Icon resources | Import | MATLAB |
J2C, J2K | JPEG 2000 (raw codestream) | Import | MATLAB |
JP2 | JPEG 2000 (Part 1) | Import | MATLAB |
JPF, JPX | JPEG 2000 (Part 2) | Import | MATLAB |
M4V | MPEG-4 Video | Import | MATLAB |
MJ2 | Motion JPEG2000 Video | Import/Export | MATLAB |
MOV | QuickTime movie | Import | MATLAB |
MP4 | MPEG-4 Video | Import/Export | MATLAB |
MPG | MPEG-1 Video | Import | MATLAB |
PBM | Portable Bitmap | Import | MATLAB |
PCX | Windows Paintbrush | Import | MATLAB |
PGM | Portable Graymap | Import | MATLAB |
PNG | Portable Network Graphics | Import/Export | MATLAB |
PNM | Portable Any Map | Import | MATLAB |
PPM | Portable Pixmap | Import | MATLAB |
RAS | Sun Raster | Import | MATLAB |
TIF, TIFF | Tagged Image File Format | Import/Export | MATLAB |
WMV | Windows Media Video | Import | MATLAB |
XWD | X Window Dump | Import | MATLAB |
Bio-Formats image reader triggered via the Bio checkbox within the Directory Contents panel of MIB | |||
AL3D | Alicona 3D | Import | Bio-Formats |
AM, AMIRAMESH, LABELS | Amira Mesh | Import | Bio-Formats |
APL, MTB, TNB, OBSEP | Olympus CellR/APL | Import | Bio-Formats |
ARF | Axon Raw Format | Import | Bio-Formats |
C01 | Cellomics | Import | Bio-Formats |
CZI | Zeiss CZI | Import | Bio-Formats |
CXD | SimplePCI & HCImage | Import | Bio-Formats |
DCM, DICOM | DICOM | Import | Bio-Formats |
DM3 | Gatan Digital Micrograph | Import | Bio-Formats |
DM4 | Gatan Digital Micrograph 2 | Import | Bio-Formats |
DV, R3D | DeltaVision | Import | Bio-Formats |
FITS | FITS (Flexible Image Transport System) | Import | Bio-Formats |
FLEX | Evotec/PerkinElmer Opera Flex | Import | Bio-Formats |
FLI | Lambert Instruments FLIM | Import | Bio-Formats |
GEL | Amersham Biosciences Gel | Import | Bio-Formats |
HDR | Analyze 7.5, Inveon , NIfTI , Unisoku | Import | Bio-Formats |
ICS, IDS | ICS (Image Cytometry Standard) | Import | Bio-Formats |
IMG | Burleigh, FEI, IMAGIC, NlfTI | Import | Bio-Formats |
IMS | Bitplane Imaris | Import | Bio-Formats |
IPL | IPLab | Import | Bio-Formats |
IPM | IPLab-Mac | Import | Bio-Formats |
IPW | ImagePro Workspace | Import | Bio-Formats |
JP2 | JPEG 2000 | Import | Bio-Formats |
L2D | Li-Cor L2D | Import | Bio-Formats |
LEI | Leica LCS LEI | Import | Bio-Formats |
LIF | Leica LAS AF LIF (Leica Image File Format) | Import | Bio-Formats |
LIFF | Improvision Openlab LIFF | Import | Bio-Formats |
LIM | LIM (Laboratory Imaging/Nikon) | Import | Bio-Formats |
LSM | Zeiss LSM (Laser Scanning Microscope) 510/710 | Import | Bio-Formats |
MDB | Zeiss LSM (Laser Scanning Microscope) 510/710 | Import | Bio-Formats |
MNC | MINC MRI | Import | Bio-Formats |
MNG | MNG (Multiple-image Network Graphics) | Import | Bio-Formats |
MOV | QuickTime Movie | Import | Bio-Formats |
MRC | MRC (Medical Research Council) | Import | Bio-Formats |
MRW | Minolta MRW | Import | Bio-Formats |
NAF | Hamamatsu Aquacosmos NAF | Import | Bio-Formats |
ND | MetaMorph Stack (STK) | Import | Bio-Formats |
ND2 | Nikon NIS-Elements ND2 | Import | Bio-Formats |
NEF | NEF (Nikon Electronic Format) | Import | Bio-Formats |
NRRD | NRRD (Nearly Raw Raster Data) | Import | Bio-Formats |
OIB, OIF | Olympus FluoView FV1000 | Import | Bio-Formats |
OME | OME-XML | Import | Bio-Formats |
PGM | PGM (Portable Gray Map) | Import | Bio-Formats |
PIC | Bio-Rad PIC | Import | Bio-Formats |
PICT | PICT (Macintosh Picture) | Import | Bio-Formats |
PSD | Adobe Photoshop PSD | Import | Bio-Formats |
RAW | Improvision Openlab Raw, Bio-Rad PIC | Import | Bio-Formats |
SDT | Becker & Hickl SPCImage | Import | Bio-Formats |
SEQ | ImagePro Sequence | Import | Bio-Formats |
STK | MetaMorph Stack (STK) | Import | Bio-Formats |
SVS | Aperio SVS TIFF | Import | Bio-Formats |
TIF | Tagged Image File Format | Import | Bio-Formats |
VWS | TillPhotonics TillVision | Import | Bio-Formats |
XDCE | InCell 1000 | Import | Bio-Formats |
XML | Extensible Markup Language | Import | Bio-Formats |
XV | Khoros VIFF (Visualization Image File Format) Bitmap | Import | Bio-Formats |
XYS | VisiTech XYS | Import | Bio-Formats |
ZVI | Zeiss AxioVision ZVI (Zeiss Vision Image) | Import | Bio-Formats |