Microscopy Image Browser Features
Microscopy Image Browser is a high-performance software package for advanced image processing, segmentation and visualization of multidimentional (2D-4D) datasets. Microscopy Image Browser is written in Matlab, but has a user friendly graphical interface that does not requre knowledge of Matlab and can be used by anybody.
Please find a list of main features below
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Contents
List of Key Features:
- Works as a Matlab program under Windows/Linux/MacOS Matlab, or as a standalone application (Windows 64bit)
- Open source, no license/fee required
- Extendable with custom plugins (tutorials)
- Load/Import multiple image and video formats using standard and custom-made readers, Bio-Formats (LOCI) reader, OMERO server, and direct import from Fiji
- Generation of multidimentional image stacks (3D/4D, width:height:color:depth:time)
- Alignment of multi-dimensional stacks and images within these stacks;
- Brightness, contrast, gamma, image mode adjustments, resize, crop functions, rotate, etc
- Semi-automatic/manual image segmentation with help of filters and interpolation in XY, XZ, or YZ planes
- Quantification and statistics for 2D/3D objects
- Export of images or models to Matlab, Amira , IMOD, STL, TIF, NRRD for 3D Slicer, Fiji BigDataViewer formats
- Direct 3D visualization using Matlab isosurfaces and volume rendering, Fiji 3D viewer, and Imaris
- Filtering of images with core Matlab and custom functions
- Log of performed actions
- Customizable Undo option
- Customizable Keyboard shortcuts
- Colorblind friendly default color modeling scheme
List of all features
Please check the list of all features page for more detailed description and video examples
Scheme of Microscopy Image Browser
Connection diagram of available tools and layers. The opened images may be filtered and adjusted with number of standard/custom functions and further segmented either via the Mask route or directly with for example the brush tool and interpolation technique.
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