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# Organelle Analysis Plugins

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The Organelle Analysis plugins in Microscopy Image Browser (MIB) offer specialized tools for studying organelle structures and properties in microscopy images. These plugins are located in the `Plugins/Organelle Analysis` folder of your MIB installation and are automatically detected when MIB starts.

## Available Plugins

- Granularity
  Analyzes model granularity, such as the ratio of sheets to tubules in endoplasmic reticulum (ER) morphology, aiding in structural studies.
  Details

- MCcalc
  Uses ray-tracing to detect and quantify contacts between organelles (e.g., mitochondria and ER), ideal for spatial relationship studies.
  Details

- Surface Area 3D
  Computes the surface area of 3D-segmented objects, useful for volumetric analysis of organelles or structures.
  Details

- Thres Analysis for Objects
  Analyzes intensity properties of segmented objects with customizable thresholding, enhancing object-specific measurements.
  Details

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