In November 2015 paper describing Microscopy Image Browser was accepted for publication in PLOS Biology, please cite it whenever referring to the software:

• I. Belevich, M. Joensuu, D. Kumar, H. Vihinen and E. Jokitalo
  Microscopy Image Browser: A platform for segmentation and analysis of multidimensional datasets
  PLoS Biology 2016 Jan 4;14(1):e1002340. doi: 10.1371/journal.pbio.1002340

In March 2021 we extended Microscopy Image Browser with DeepMIB a tool for training of convolutional neural networks for image segmentation. If you used it in your research, cite with this reference:

• I. Belevich, and E. Jokitalo
  DeepMIB: User-friendly and open-source software for training of deep learning network for biological image segmentation
  PLoS Comput Biol. 2021 Mar 2;17(3):e1008374. doi: 10.1371/journal.pcbi.1008374