To download MIB please select the distribution and press the corresponding button on the right:

• MATLAB version - we recommend to use this option, requires MATLAB license
• Academic Standalone for Windows - MIB compiled for MATLAB R2021b
• Academic Standalone for MacOS - MIB compiled for MATLAB R2021b for Mac OS
• Academic Standalone for Linux - MIB compiled for MATLAB R2021b for Linux
• GitHub - MIB source code on GitHub, virtually identical to the MATLAB version above

Please look here for installation details.


MATLAB Windows, 64bit, R2022b

Version 2.83 (19.06.2022)
The standalone versions of MIB-Win and MIB-Mac come with R2021b, while MIB-Linux comes with R2019b

• Added generation of image 2D and 3D patches around annotation labels
• Added possibility to load part of the dataset for TIF files (right click over selected filenames->Load part of the dataset (AM and TIF))
• Added Info field to measurements to supplement them with additional information (Menu->Tools->Measure length->Measure tool)
• Added generation of pyramidal TIF files and batch processing of BioFormat files
• Added the "show prompt" option to the Annotations tool (Segmentation panel->Annotations->show prompt)
• Added [InheritLastDIR] tag to inherit directory name from DIR LOOP when saving images using the Protocol organizer
• Added "end" tag to the crop operation for the Protocol organizer
• Added Drag-and-drop model files to the Segmentation table to load them
• [2.831] Added Destination: Current to Crop in the batch processing mode
• Correction of pixel size for pyramidal formats when levels are not multiplied by factor of 2
• Fixed loading of partial AM files, when step was set to 1
• Fixed loading of TIF files with YCbCr color space
• [2.831] MATLAB versions compatibility bug fixes
• Updated Bio-Formats to 6.10.0
• [DeepMIB] Rearranged Architecture into Workflow and Architecture parameters
• [DeepMIB] Optimized to work without preprocessing of images
• [DeepMIB] Added blockedImage mode and set it as default processing engine
• [DeepMIB] Added dynamic masking for the blockedImage processing mode
• [DeepMIB] Added 2D Patch-wise mode to process images in patches
• [DeepMIB] Added Resnet18, Resnet50, Resnet101, Xception networks for the patch-wise mode
• [DeepMIB] Added alternative arrangement of files for 2D Patch-wise mode where each class is stored in its own directory
• [DeepMIB] Added "Load models" to the Options tab to skip loading of images when they are already preloaded
• [DeepMIB] Added possibility to specify frequency of saving checkpoint networks (R2022a or newer)
• [DeepMIB] Added percentage parameter to the overlapping tiles mode
• [DeepMIB] Added possibility to select a single augmentation to preview
• [DeepMIB] Added new 3D augmentations reaching 18 operations
• [DeepMIB] Added DeepLabV3-Resnet50 to 2D semantic segmentation (MATLAB MIB only)
• [DeepMIB] Fixed preview of some patches and contrast stretch in Activation Explorer
• Bug fixes

Click to access archive with previous versions of MIB2

Version 1.305 23.12.2016 [LEGACY RELEASE]
• Improved and simplified the Segmentation panel
• Added list of recent directories
• Added "Mask_" prefix to filename when saving masks
• Added "FirstAxisLength" and "SecondAxisLength" properties to the Get Statistics dialog for calculation of exact lengths of the objects (ver 1.302)
• Added default state of the link channels checkbox to selected in the Display adjustment dialog (ver 1.302)
• The contrast normalization over selected areas in Z does not require selection of all slices
• Fix of substructures in Dataset Info dialog
• Fix of fine-tune checkbox for the freehand mode of the measure tool
• Improved performance of black-and-white thresholding
• Fix of add matarial bug (ver 1.303)
• Fix of export annotations to a file for MacOS (ver 1.303)
• Fix startup crashes for compiled MIB on some windows configurations (ver 1.304)
• Update of font size for buttons and popup menus (ver 1.305)
• Fix of a bug in the masked-based image alignment tool (ver 1.305)