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MIB version 2
Actual versions
MIB Matlab 2.651 [25.04.2020]
MIB Windows 2.651 [25.04.2020]
MIB Mac 2.65 [23.03.2020]
If you have a valid Matlab license it is recommended to use MIB for Matlab environment version!


To download MIB please select the distribution and press the corresponding button on the right:
  • Matlab version - this is recommended option for those who have a Matlab license
  • Standalone for Windows - MIB compiled for Matlab R2019b
  • Standalone for Windows, recent Matlab - MIB compiled for the recent release of Matlab
  • Standalone for MacOS - MIB compiled for Matlab R2019b for Mac OS
  • GitHub - MIB source code on GitHub, virtually identical to the Matlab version above
Please look here for installation details.


    Version 2.65 - 2.651 (25.04.2020)
  • The deployed version of MIB comes with R2019b instead of R2017a
  • Added Drag and drop files into the Image View panel
  • Added dialog with 30 new image filters (Menu->Image->Image filters...)
  • Added dataset alignment using AMST: Align to Median Smoothed Template (Menu->Dataset->Alignment)
  • Added wound healing assay (Menu->Tools->Wound healing assay)
  • Added transformation of Z to C (Menu->Dataset->Transform...)
  • Added additional options to the batch processing: file loop/combine files -> current MIB directory; selection/removal of multiple directories in the Directrory loops
  • Added backup of the full mibImage class
  • Added full backup for dataset transform, resize, crop operations
  • Added squeezing of material indices for models with more than 255 materials (Segmentation panel->Squeeze button)
  • Added a new key shortcut ('n') to increase index of the active material by 1 for the models with more than 255 materials
  • Added saving snapshots in PNG format
  • Added measurements to restore shuffled datasets
  • Updated resampling for batch processing mode
  • Swapped Log and Info buttons in the Path panel
  • Tweaked names of plugins to include spaces between capital letters
  • Optimized handling of Java classes
  • Updated Bio-Formats to 6.4.0 (requires Matlab R2017b or newer)
  • Plugins: Surface Area 3D - a plugin for analysis of 3D surfaces and contacts (Menu->Plugins->Organelle analysis->Surface area3D)
  • Plugins: Spacial Control Points to generate a set of random points over the masked area (Menu->Plugins->Plasmodesmata->Spatial control points)
  • Plugins: Cell Wall Thickness to calculate thickness of cell walls (Menu->Plugins->Plasmodesmata->Cell wall thickness)
  • [2.651] Added smoothing of multiple materials of models via batch processing
  • [2.651] Fixed definition of the starting point for the Membrane ClickTracker tool
  • [2.651] Fixed setData method for specific materials of the model


Click to access archive with previous versions of MIB2

MIB version 1


    Version 1.305 23.12.2016
  • Improved and simplified the Segmentation panel
  • Added list of recent directories
  • Added "Mask_" prefix to filename when saving masks
  • Added "FirstAxisLength" and "SecondAxisLength" properties to the Get Statistics dialog for calculation of exact lengths of the objects (ver 1.302)
  • Added default state of the link channels checkbox to selected in the Display adjustment dialog (ver 1.302)
  • The contrast normalization over selected areas in Z does not require selection of all slices
  • Fix of substructures in Dataset Info dialog
  • Fix of fine-tune checkbox for the freehand mode of the measure tool
  • Improved performance of black-and-white thresholding
  • Fix of add matarial bug (ver 1.303)
  • Fix of export annotations to a file for MacOS (ver 1.303)
  • Fix startup crashes for compiled MIB on some windows configurations (ver 1.304)
  • Update of font size for buttons and popup menus (ver 1.305)
  • Fix of a bug in the masked-based image alignment tool (ver 1.305)




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