To download MIB please select the distribution and press the corresponding button on the right:

• MATLAB version - we recommend to use this option, requires MATLAB license
• Academic Standalone for Windows - MIB compiled for MATLAB R2021b
• Academic Standalone for Windows, recent MATLAB - MIB compiled for the recent release of MATLAB
• Academic Standalone for MacOS - MIB compiled for MATLAB R2021b for Mac OS
• Academic Standalone for Linux - MIB compiled for MATLAB R2021b for Linux
• GitHub - MIB source code on GitHub, virtually identical to the MATLAB version above

Please look here for installation details.

Version 2.84 (09.12.2022)
The standalone versions of MIB come with R2021b

• Added Example datasets: Menu->File->Example datasets
• Added new 3D Volume renderer (at the moment only for MATLAB version): Menu->File->Render volume->MIB rendering
• Added alignement of datasets without loading using the Automatic feature-based mode
• Added white balance correction (Menu->Image->Tools for images->White balance correction)
• Added linking of views
• Added export images to OME-TIFF 5D formatMenu->File->Save image as...
• Added modification of annotation size to settings in the Annotation list window
• Added [F] template for saving images to Batch Processing
• Added showWaitbar option to Batch Processing of DIRLOOPs
• Added resizing of panels to the batch processing dialog
• Added erosion of models and erosion with parallel processing
• Added dilation of models
• Added calculation of DistanceMaps relative to model, masks, or selections (Menu->Image->Image Filters->Basic image filtering->DistanceMap)
• Added basic mathematical operations (add, subtract, multiply, divide to image filters (Menu->Image->Image Filters->Basic image filtering->MathOps)
• Added destination "Current" to the Intensity Projection tool (Menu->Image->Tools for Images->Intensity projection)
• Updated Bio-Formats to 6.11.0 (please delete the old bioformats_package.jar from MIB\ImportExportTools\BioFormats)
• Updated Plugins->TripleAreaIntensity to highlight the connected objects using the Mask layer
• Fixed bug in the shape interpolation method seen in some configuration of shapes (thanks to Aapo Tervonen, PhD, University of Jyväskylä)
• Fixed slow update of selected directory in CropObjects to file dialog
• Fixed application of MorphOps for images when the active container of MIB has been changed
• Fixed loading of some jpg files due to multiple ImageDescription tags
• [DeepMIB] Added prediction of 3D stacks with 2D models
• [DeepMIB] Added possibility to specify patch size during augmentation preview
• [DeepMIB] Added 'DeepLabV3 Xception' and 'DeepLabV3 Inception-ResNet-v2' for MATLAB version of MIB
• [DeepMIB] Added swish activation layer as one of available options
• [DeepMIB] Added a function to balance classes for large rasters (Options tab->Tools->Balance classes)
• [DeepMIB] Added network preview for the deployed version
• [DeepMIB] Added saving of the custom training plot as an image to a file
• [DeepMIB] Added scaling of the loss function plot upon right mouse click
• [DeepMIB] Fixed generation of score maps for the Legacy mode

Click to access archive with previous versions of MIB2

Version 1.305 23.12.2016 [LEGACY RELEASE]
• Improved and simplified the Segmentation panel
• Added list of recent directories
• Added "Mask_" prefix to filename when saving masks
• Added "FirstAxisLength" and "SecondAxisLength" properties to the Get Statistics dialog for calculation of exact lengths of the objects (ver 1.302)
• Added default state of the link channels checkbox to selected in the Display adjustment dialog (ver 1.302)
• The contrast normalization over selected areas in Z does not require selection of all slices
• Fix of substructures in Dataset Info dialog
• Fix of fine-tune checkbox for the freehand mode of the measure tool
• Improved performance of black-and-white thresholding
• Fix of add matarial bug (ver 1.303)
• Fix of export annotations to a file for MacOS (ver 1.303)
• Fix startup crashes for compiled MIB on some windows configurations (ver 1.304)
• Update of font size for buttons and popup menus (ver 1.305)
• Fix of a bug in the masked-based image alignment tool (ver 1.305)