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MIB version 2
Actual versions
MIB MATLAB 2.84 [09.12.2022]
MIB Windows 2.84 [09.12.2022]
MIB Mac 2.84 [09.12.2022]
MIB Linux 2.84 [09.12.2022]
If you have a valid MATLAB license it is recommended to use MIB for MATLAB environment version!

Release R2022a is not recommended to work with microscopy TIF files, use R2021b instead


To download MIB please select the distribution and press the corresponding button on the right:
  • MATLAB version - we recommend to use this option, requires MATLAB license
  • Academic Standalone for Windows - MIB compiled for MATLAB R2021b
  • Academic Standalone for Windows, recent MATLAB - MIB compiled for the recent release of MATLAB
  • Academic Standalone for MacOS - MIB compiled for MATLAB R2021b for Mac OS
  • Academic Standalone for Linux - MIB compiled for MATLAB R2021b for Linux
  • GitHub - MIB source code on GitHub, virtually identical to the MATLAB version above
Please look here for installation details.


    Version 2.84 (09.12.2022)
    The standalone versions of MIB come with R2021b
  • Added Example datasets: Menu->File->Example datasets
  • Added new 3D Volume renderer (at the moment only for MATLAB version): Menu->File->Render volume->MIB rendering
  • Added alignement of datasets without loading using the Automatic feature-based mode
  • Added white balance correction (Menu->Image->Tools for images->White balance correction)
  • Added linking of views
  • Added export images to OME-TIFF 5D formatMenu->File->Save image as...
  • Added modification of annotation size to settings in the Annotation list window
  • Added [F] template for saving images to Batch Processing
  • Added showWaitbar option to Batch Processing of DIRLOOPs
  • Added resizing of panels to the batch processing dialog
  • Added erosion of models and erosion with parallel processing
  • Added dilation of models
  • Added calculation of DistanceMaps relative to model, masks, or selections (Menu->Image->Image Filters->Basic image filtering->DistanceMap)
  • Added basic mathematical operations (add, subtract, multiply, divide to image filters (Menu->Image->Image Filters->Basic image filtering->MathOps)
  • Added destination "Current" to the Intensity Projection tool (Menu->Image->Tools for Images->Intensity projection)
  • Updated Bio-Formats to 6.11.0 (please delete the old bioformats_package.jar from MIB\ImportExportTools\BioFormats)
  • Updated Plugins->TripleAreaIntensity to highlight the connected objects using the Mask layer
  • Fixed bug in the shape interpolation method seen in some configuration of shapes (thanks to Aapo Tervonen, PhD, University of Jyväskylä)
  • Fixed slow update of selected directory in CropObjects to file dialog
  • Fixed application of MorphOps for images when the active container of MIB has been changed
  • Fixed loading of some jpg files due to multiple ImageDescription tags
  • [DeepMIB] Added prediction of 3D stacks with 2D models
  • [DeepMIB] Added possibility to specify patch size during augmentation preview
  • [DeepMIB] Added 'DeepLabV3 Xception' and 'DeepLabV3 Inception-ResNet-v2' for MATLAB version of MIB
  • [DeepMIB] Added swish activation layer as one of available options
  • [DeepMIB] Added a function to balance classes for large rasters (Options tab->Tools->Balance classes)
  • [DeepMIB] Added network preview for the deployed version
  • [DeepMIB] Added saving of the custom training plot as an image to a file
  • [DeepMIB] Added scaling of the loss function plot upon right mouse click
  • [DeepMIB] Fixed generation of score maps for the Legacy mode


Click to access archive with previous versions of MIB2

MIB version 1 [LEGACY RELEASE]


    Version 1.305 23.12.2016 [LEGACY RELEASE]
  • Improved and simplified the Segmentation panel
  • Added list of recent directories
  • Added "Mask_" prefix to filename when saving masks
  • Added "FirstAxisLength" and "SecondAxisLength" properties to the Get Statistics dialog for calculation of exact lengths of the objects (ver 1.302)
  • Added default state of the link channels checkbox to selected in the Display adjustment dialog (ver 1.302)
  • The contrast normalization over selected areas in Z does not require selection of all slices
  • Fix of substructures in Dataset Info dialog
  • Fix of fine-tune checkbox for the freehand mode of the measure tool
  • Improved performance of black-and-white thresholding
  • Fix of add matarial bug (ver 1.303)
  • Fix of export annotations to a file for MacOS (ver 1.303)
  • Fix startup crashes for compiled MIB on some windows configurations (ver 1.304)
  • Update of font size for buttons and popup menus (ver 1.305)
  • Fix of a bug in the masked-based image alignment tool (ver 1.305)




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