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MIB version 2
Actual versions
MIB MATLAB 2.9102 [08.05.2025]
MIB Windows 2.9102 [08.05.2025]
MIB Mac 2.91 [29.04.2025]
MIB Linux 2.9102 [08.05.2025]
If you have a valid MATLAB license it is recommended to use MIB for MATLAB environment version!

Release R2022a is not recommended to work with microscopy TIF files, use R2021b instead


To download MIB please select the distribution and press the corresponding button on the right:
  • MATLAB version - we recommend to use this option, requires MATLAB license
  • Academic Standalone for Windows - MIB compiled for MATLAB R2024b
  • Academic Standalone for MacOS - MIB compiled for MATLAB R2024b for Mac OS
  • Academic Standalone for Linux - MIB compiled for MATLAB R2024a for Linux
  • GitHub - MIB source code on GitHub, virtually identical to the MATLAB version above
Please look here for installation details.



    Version 2.9102 (08.05.2025)
    • Added Segment-anything-2 and 2.1 models for manual/semi-automatic segmentation
    • Added Interactive 3D mode for Segment-anything-2 models
    • Added a new version of automatic alignment (Automatic feature-based v2)
    • Updated documentation
    • Added loading of part of dataset using BioFormats reader
    • Added modification of the Info box into freeline of Measure Tool
    • Added Multi-rename tool for batch renaming of files: Plugins->File processing->Multi rename tool
    • Added option of returning back to a slice: use Alt+scroll wheel to change slice; release Alt to return back to the slice when Alt+scroll wheel was triggered
    • Added operations with materials: add, insert, rename, reorder, swap, remove, export, save
    • Added swap of colors in the model from the segmentation panel
    • Added SIFT feature detector for automatic alignment
    • Added shortcuts (Shift+D, Ctrl+D) for two favorite segmentation tools
    • Added presets for segmentation tool (Shift + 1/2/3 stored the current state and 1/2/3 restores it)
    • Added warning dialog when loading files, while a model exists
    • Added use of annotations to perform single landmark point alignment
    • Added automatic interpolation of annotations when they added using shift+mouse click
    • Added new rendering modes for volumes (CinematicRendering, LightScattering) and overlays (LabelOverlay, VolumeOverlay, GradientOverlay) in MIB rendering
    • Added rotation around selected object, ambient and diffuse lights in MIB 3D volume rendering
    • Added pattern rename of annotations
    • Fixed adding a model in the rotated view when the blockMode is on
    • Fixed 3D rendering of the selected material
    • Replaced Alt+Shift + with Alt+Shift+Ctrl + to pan the view using Wacom pen eraser
    • [DeepMIB] Added U-net +Encoder architecture into 2D and 2.5D semantic segmentation workflows
    • [DeepMIB] Rearranged selection of the encoder network
    • [DeepMIB] Added weights preview in the Activation explorer
    • [DeepMIB] Added image downsampling parameter for automatic resizing of images for prediction
    • [DeepMIB] Added automatic saving of the custom training plot as PNG and MATLAB-FIG
    • [DeepMIB] Added saving of MIB version into the mibCfg and mibDeep files
    • [DeepMIB] Fixed Explore activations when images for prediction are not under Images directory
    • [DeepMIB] Fixed training of 2.5D networks without augmentations
    • [DeepMIB] Fixed correct handling of random numbers in the augmentation patches preview
    • [DeepMIB] Fixed accidental appearance of Deep.AugOpt2D.ImageNoise field in augmentation preferences
    • [2.9102] Added an option to automatically show a dialog to provide information about an added measurement into the Measure Tool
    • [2.9102] Fixed the Graphcut tool in the 2D current slice mode



    Click to access archive with previous versions of MIB2

    MIB version 1 [LEGACY RELEASE]


      Version 1.305 23.12.2016 [LEGACY RELEASE]
    • Improved and simplified the Segmentation panel
    • Added list of recent directories
    • Added "Mask_" prefix to filename when saving masks
    • Added "FirstAxisLength" and "SecondAxisLength" properties to the Get Statistics dialog for calculation of exact lengths of the objects (ver 1.302)
    • Added default state of the link channels checkbox to selected in the Display adjustment dialog (ver 1.302)
    • The contrast normalization over selected areas in Z does not require selection of all slices
    • Fix of substructures in Dataset Info dialog
    • Fix of fine-tune checkbox for the freehand mode of the measure tool
    • Improved performance of black-and-white thresholding
    • Fix of add matarial bug (ver 1.303)
    • Fix of export annotations to a file for MacOS (ver 1.303)
    • Fix startup crashes for compiled MIB on some windows configurations (ver 1.304)
    • Update of font size for buttons and popup menus (ver 1.305)
    • Fix of a bug in the masked-based image alignment tool (ver 1.305)




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