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Microscopy Image Browser

MIB Splash

Microscopy Image Browser
Image segmentation and beyond

Microscopy Image Browser (MIB) is a GUI tool written in MATLAB for segmentation of multidimensional datasets obtained by light or electron microscopy.

Powered by MATLAB, The MathWorks, Inc.

How to cite

Microscopy Image Browser:

  • I. Belevich, M. Joensuu, D. Kumar, H. Vihinen, and E. Jokitalo
    Microscopy Image Browser: A platform for segmentation and analysis of multidimensional datasets
    PLoS Biology 2016 Jan 4;14(1):e1002340. doi: 10.1371/journal.pbio.1002340

DeepMIB:

  • I. Belevich and E. Jokitalo
    DeepMIB: User-friendly and open-source software for training of deep learning network for biological image segmentation
    PLoS Comput Biol. 2021 Mar 2;17(3):e1008374. doi: 10.1371/journal.pcbi.1008374

Development Team

Developed during 2010–2025 by:
      Core Developer:
      Ilya Belevich
      Developers:
      Merja Joensuu, Darshan Kumar, Helena Vihinen, and Eija Jokitalo

Settings button Visit the Microscopy Image Browser home page

Visit the Electron Microscopy Unit

Electron Microscopy Unit
      Institute of Biotechnology
      PO Box 56 (Viikinkaari 9)
      00014, University of Helsinki
      Finland

API Class Reference

Access the API class reference from the MIB interface:
MIB → Menu → Help → Class Reference

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