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Organelle Analysis Plugins

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The Organelle Analysis plugins in Microscopy Image Browser (MIB) offer specialized tools for studying organelle structures and properties in microscopy images. These plugins are located in the Plugins/Organelle Analysis folder of your MIB installation and are automatically detected when MIB starts.

Available Plugins

  • Granularity
    Analyzes model granularity, such as the ratio of sheets to tubules in endoplasmic reticulum (ER) morphology, aiding in structural studies.
    Details

  • MCcalc
    Uses ray-tracing to detect and quantify contacts between organelles (e.g., mitochondria and ER), ideal for spatial relationship studies.
    Details

  • Surface Area 3D
    Computes the surface area of 3D-segmented objects, useful for volumetric analysis of organelles or structures.
    Details

  • Thres Analysis for Objects
    Analyzes intensity properties of segmented objects with customizable thresholding, enhancing object-specific measurements.
    Details

Back to MIB | User Interface | Plugins