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External Licenses

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Microscopy Image Browser (MIB) adapts code from multiple open-source projects. Below are the licenses for the external functions and libraries used in MIB.

Abbreviations

  • Apache-2.0: Apache 2.0 license
  • CC BY-ND: Attribution-NoDerivs 3.0 Unported
  • FreeBSD: Berkeley Software Distribution, 2-clause license, GPL compatible
  • GPLv2: GNU General Public License, version 2
  • GPLv3: GNU General Public License, version 3
  • LGPL: GNU Lesser General Public License
  • ModifiedBSD: Berkeley Software Distribution, 3-clause license, GPL compatible
  • MIT: A free software license originating at the Massachusetts Institute of Technology, GPL compatible
  • ND: No data

External Packages

Name Author(s) Contact License, Year MIB Version
Accurate Fast Marching Dirk-Jan Kroon, University of Twente via MATLAB Exchange FreeBSD, 2011 0.x-2.x
ANISODIFF Peter Kovesi web site MIT, 2000-2002 0.x-2.x
Bio-Formats Melissa Linkert, Curtis Rueden et al. web site GPLv2, 2002-2013 0.x-2.x
bwdistsc, 3D Euclidean distance transform for variable data aspect ratio Yuriy Mishchenko, Toros University via MATLAB Exchange FreeBSD, 2007-2013 0.x-2.x
Custom GINPUT Jiro Doke, MathWorks via MATLAB Exchange ModifiedBSD, 2016 2.82-
Cell migration in scratch wound assays Constantino Carlos Reyes-Aldasoro, City, University of London via MATLAB Exchange GPLv3, 2018 2.65-
DnD_uifigure: drag & drop functionality for AppDesigner components Xiangrui Li, The Ohio State University via MATLAB Exchange MIT, 2020-2023 2.90-
Drag & Drop functionality for JAVA GUI components Maarten van der Seijs, Delft University of Technology, the Netherlands via MATLAB Exchange FreeBSD, 2015 2.61-
DrawRegionBoundaries Peter Kovesi, Centre for Exploration Targeting, School of Earth and Environment, The University of Western Australia author's website MIT, 2013 0.x-2.x
Drifty_shifty_deluxe Joshua D. Sugar, Sandia National Laboratories, Livermore, CA via MATLAB Exchange Custom, 2014 0.x-2.x
Export_fig Oliver Woodford and Yair Altman via MATLAB Exchange ModifiedBSD, 2014-2015 0.x-2.x
Extrema functions Carlos Adrian Vargas Aguilera, Universidad de Guadalajara via MATLAB Exchange FreeBSD, 2006-2007 0.x-1.x
Fast 3D/2D Region Growing (MEX) Christian Wuerslin, Stanford University via MATLAB Exchange ModifiedBSD, 2013-2015 0.x-2.x
Fast/Robust Template Matching
used in MIB 1.22 and earlier
Dirk-Jan Kroon, University of Twente via MATLAB Exchange FreeBSD, 2009-2011 0.x-1.22
FindJObj - find java handles of MATLAB graphic objects Yair Altman via MATLAB Exchange FreeBSD, 2007-2013 0.x-2.x
Fstack - extended depth-of-field image Said Pertuz, Universitat Rovira i Virgili, Tarragona, Spain via MATLAB Exchange ModifiedBSD, 2013 2.51-
HistThresh toolbox Antti Niemistö, Tampere University of Technology, Finland Github GPLv3, 2014 2.51-
Hardware accelerated 3D viewer for MATLAB Jean-Yves Tinevez, Institut Pasteur via MATLAB Exchange FreeBSD, 2011 0.x-2.x
Hessian based Frangi Vesselness filter Marc Schrijver and Dirk-Jan Kroon, University of Twente via MATLAB Exchange FreeBSD, 2001-2009 0.x-2.x
Highly portable JSON-input parser Nedialko via MATLAB Exchange FreeBSD, 2009 0.x-2.x
IceImarisConnector Aaron C. Ponti, ETH Zurich web link GPLv2, 2013 0.x-2.x
Image Edge Enhancing Coherence Filter Dirk-Jan Kroon, Pascal Getreuer, University of Twente via MATLAB Exchange FreeBSD, 2009 0.x-1.x
Image Measurement Utility Jan Neggers, Eindhoven University of Technology via MATLAB Exchange FreeBSD, 2009-2014 1.x-2.x
IMAGEVIEWER Jiro Doke, MathWorks via MATLAB Exchange ModifiedBSD, 2010 0.x-2.x
IMCLIPBOARD Jiro Doke, MathWorks via MATLAB Exchange ModifiedBSD, 2010 0.x-2.x
IMGAUSSIAN Dirk-Jan Kroon, University of Twente via MATLAB Exchange FreeBSD, 2009 0.x-2.x
Local Normalization Guanglei Xiong, Tsinghua University, Beijing via MATLAB Exchange FreeBSD, 2005 0.x-1.x
MatGeom David Legland, INRA, France web site FreeBSD, 2011- 2.3-
MatTomo, a part of PEET Boulder Laboratory for 3-D Electron Microscopy of Cells web site GPLv2, 2006-2010 0.x-2.x
MAXFLOW/MINCUT algorithm, v2.22 Yuri Boykov, University of Western Ontario and Vladimir Kolmogorov, Microsoft Research, Cambridge web site GPLv2, 2001-2014 0.x-2.x
MAXFLOW/MINCUT MATLAB wrapper Michael Rubinstein, Google via MATLAB Exchange FreeBSD, 2008 0.x-2.x
MkDocs Tom Christie & MkDocs Team author's website FreeBSD, 2014 2.91-
Membrane detection with Random Forest Verena Kaynig, Harvard School of Engineering and Applied Sciences author's website GPLv2, 2010 0.x-2.x
MIJ: Running ImageJ and Fiji within MATLAB Daniel Sage, Dimiter Prodanov, Jean-Yves Tinevez, and Johannes Schindelin, EPFL Lausanne via MATLAB Exchange ModifiedBSD, 2012-2017 2.6-
MTOC++ Martin Drohmann, Universität Münster, Daniel Wirtz, Universität Stuttgart via MATLAB Exchange FreeBSD, 2011-2013 0.x-2.x
NRRD Format File Reader Jeff Mather, The MathWorks, Inc. via MATLAB Exchange ModifiedBSD, 2012 0.x-2.x
OMERO MATLAB bindings The Open Microscopy Environment OME website GPLv2, 2019 0.x-2.x
Patch Normals Dirk-Jan Kroon, University of Twente via MATLAB Exchange FreeBSD, 2009 2.22-
Prettify MATLAB html Harry Dymond, University of Bristol via MATLAB Exchange ModifiedBSD, 2020 2.83-2.91
Projects:MATLABSlicerExampleModule, to read NRRD format John Melonakos web link ModifiedBSD, 2012 0.x-2.x
Random Forest MATLAB Abhishek Jaiantilal web link GPLv2, 2012 0.x-2.x
Region Adjacency Graph (RAG) David Legland, INRA, France via MATLAB Exchange FreeBSD, 2007-2013 0.x-2.x
regionprops3 Chaoyuan Yeh, University of Southern California via MATLAB Exchange FreeBSD, 2014 0.x-2.x
RENDER Dirk-Jan Kroon, Focal Machine Vision en Optical Systems via MATLAB Exchange FreeBSD, 2008-2011 1.x-2.x
Render RGB text over RGB or Grayscale Image Davide Di Gloria, Università di Genova via MATLAB Exchange FreeBSD, 2010 0.x-2.x
Segment-anything, models Kirillov A, Mintun E, Ravi N, Mao H, Rolland C, Gustafson L, Xiao T, Whitehead S, Berg AC, Lo W-Y, Dollar P, Girshick R, Meta AI authors' website Apache-2.0, 2023 2.9-
Segment-anything 2, models Ravi N, Gabeur V, Hu Y-T, Hu R, Ryali C, Ma T, Khedr H, Rädle R, Rolland C, Gustafson L, Mintun E, Pan J, Alwala KV, Carion N, Wu C-Y, Girshick R, Dollár P, Feichtenhofer C, Meta AI authors' website Apache-2.0, 2024 2.91-
Segment-anything for Microscopy, models Archit A, Nair S, Khalid N, Hilt P, Rajashekar V, Freitag M, Gupta S, Dengel A, Ahmed S, Pape C GitHub MIT, 2023 2.9-
SLIC (Simple Linear Iterative Clustering) Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Süsstrunk, Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland authors' website ModifiedBSD, 2015 0.x-2.x
STLWRITE Sven Holcombe, University of Michigan via MATLAB Exchange FreeBSD, 2008-2015 1.x-2.x
STRUCT2XML Wouter Falkena, Delft University of Technology via MATLAB Exchange FreeBSD, 2010 0.x-2.x
TEEM.DLL for MATLABSlicerExampleModule Gordon Kindlmann authors' website LGPL plus static linking exception, 2012 0.x-2.x
UIGETFILE_N_DIR Tiago / Peugas via MATLAB Exchange FreeBSD, 2011 2.6-
VIEW3D Torsten Vogel via MATLAB Exchange FreeBSD, 1999 0.x-2.x
VIOLIN Holger Hoffmann via MATLAB Exchange FreeBSD, 2015 2.65-
VTKPNG.DLL for MATLABSlicerExampleModule Ken Martin, Will Schroeder, Bill Lorensen authors' website ModifiedBSD, 2012 0.x-2.x
XLWRITE: Generate XLS(X) files without Excel on Mac/Linux/Win Alec de Zegher, NV Bekaert SA via MATLAB Exchange FreeBSD, 2013 2.1-2.x
XLSWRITE Improved Barry Dillon, AON Insurance Brokers via MATLAB Exchange FreeBSD, 2010 0.x-2.x
XML2STRUCT Wouter Falkena, Delft University of Technology via MATLAB Exchange FreeBSD, 2010 0.x-2.x
Some icons Icons8.com website CC BY-ND, 3.0, 2018 2.22-

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