File Menu

Provides access to some file handling actions for image dataset

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Import image from...

OMERO Import

Establishes connection and loads images from OMERO server. Requires OMERO server files to be downloaded. Please refer to the System Requirements pages for details of installation.

Selection of a server:

In the following dialog it is possible to select desired dataset and the range to take

A brief demonstration is available in the following video:
https://youtu.be/iR7OL0eJGuw

Chopped images...

This is a special mode that allows to chop and combine back the opened dataset to a defined number of smaller volumes.

Please refer to the Chopped images... section for details.

Export image to Matlab

Export images to the main Matlab workspace. In addition to the image variable, another variable with parameters of the dataset (containers.Map class) is automatically created. This containers.Map can be imported back to im_browser later together with the modified dataset to restore parameters of the dataset.

A brief demonstration on Import/Export is available in the following video:
https://youtu.be/zUJ1RUuTLVs

Save image as

Saves the dataset to a disk. The following image formats are implemented:

Make movie

Saves dataset as a movie file. All objects that are shown in the image view window will be captured. Note! If the image width is too small the scale bar is not rendered. See more here.

Make snapshot

Makes snapshot of the current slice. All objects that are shown in the image view window will be captured. See more here.

Render volume (with Fiji)

Volume rendering of the opened dataset using Fiji 3D image viewer. Please refer to details in the Microscopy Image Browser System Requirements Fiji section for installation of Fiji.

A brief demonstration is available in the following video:
https://youtu.be/DZ1Tj3Fh2HM

Additional dialog prompts for extra parameters for rendering:

Preferences

View and edit preferences of Microscopy Image Browser. Allows to modify colors of the Selection, Model and Mask layers, default behaviour of the mouse wheel and keys, settings of Undo. See more...

Please note, im_browser stores its configuration parameters in a file that is automatically generated after closing of im_browser:

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