In November 2015 paper describing Microscopy Image Browser was accepted for publication in PLOS Biology, please cite it whenever referring to the software:

Microscopy Image Browser: A platform for segmentation and analysis of multidimensional datasets
I. Belevich, M. Joensuu, D. Kumar, H. Vihinen and E. Jokitalo
PLoS Biology 2016 Jan 4;14(1):e1002340. doi: 10.1371/journal.pbio.1002340
Link to the article

An additional publication is available for application of MIB for segmentation of images using convolutional neural networks:

DeepMIB: User-friendly and open-source software for training of deep learning network for biological image segmentation
I. Belevich and E. Jokitalo
PLoS Comput Biol. 2021 Mar 2;17(3):e1008374. doi: 10.1371/journal.pcbi.1008374
Link to the article