mibHistThresController Class Reference

class is responsible for showing the Morphological operations for images window, available from MIB->Menu->Tools->Semi-automatic segmentation->Automatic black-and-white thresholding More...

Inheritance diagram for mibHistThresController:

Collaboration diagram for mibHistThresController:

Public Member Functions
	mibHistThresController (mibModel, varargin)
function	closeWindow ()
	closing mibHistThresController window
function	updateWidgets ()
	update widgets of this window
function	Method_Callback ()
	callback for change of obj.View.handles.Method
function	previewBtn_Callback ()
	callback for press of obj.View.handles.previewBtn
function	returnBatchOpt (BatchOptOut)
	return structure with Batch Options and possible configurations via the notify syncBatch event Parameters: BatchOptOut: a local structure with Batch Options generated during Continue callback. It may contain more fields than obj.BatchOpt structure
function	updateBatchOptFromGUI (hObject)
function	continueBtn_Callback ()
	perform thresholding

Static Public Member Functions
static function	ViewListner_Callback2 (obj, src, evnt)

Public Attributes
	mibModel
	handles to the model
	View
	handle to the view
	listener
	a cell array with handles to listeners
	mode
	morphops mode: mode2d_Slice, mode2d_Stack, mode2d_Dataset, mode3d_Stack, mode3d_Dataset
	BatchOpt
	a structure compatible with batch operation, see more in the constructor .showWaitbar - logical, true - show, false - do not show the waitbar .ColorChannel - cell string Ch 1 or Ch 2... the color channel for thresholding
EVENT	closeEvent
	> Description of events event firing when window is closed
Public Attributes inherited from handle
	addlistener
	Creates a listener for the specified event and assigns a callback function to execute when the event occurs.
	notify
	Broadcast a notice that a specific event is occurring on a specified handle object or array of handle objects.
	delete
	Handle object destructor method that is called when the object's lifecycle ends.
	disp
	Handle object disp method which is called by the display method. See the MATLAB disp function.
	display
	Handle object display method called when MATLAB software interprets an expression returning a handle object that is not terminated by a semicolon. See the MATLAB display function.
	findobj
	Finds objects matching the specified conditions from the input array of handle objects.
	findprop
	Returns a meta.property objects associated with the specified property name.
	fields
	Returns a cell array of string containing the names of public properties.
	fieldnames
	Returns a cell array of string containing the names of public properties. See the MATLAB fieldnames function.
	isvalid
	Returns a logical array in which elements are true if the corresponding elements in the input array are valid handles. This method is Sealed so you cannot override it in a handle subclass.
	eq
	Relational functions example. See details for more information.
	transpose
	Transposes the elements of the handle object array.
	permute
	Rearranges the dimensions of the handle object array. See the MATLAB permute function.
	reshape
	hanges the dimensions of the handle object array to the specified dimensions. See the MATLAB reshape function.
	sort
	ort the handle objects in any array in ascending or descending order.

Detailed Description

class is responsible for showing the Morphological operations for images window, available from MIB->Menu->Tools->Semi-automatic segmentation->Automatic black-and-white thresholding

How to use

 // batch mode call, names of the fields can be seen in the alt-text of the widgets!
 // see the class constructor for the full contents of the BatchOpt structure
 BatchOpt.ColorChannel = {'Ch 1'};    // color channel for thresholding
 BatchOpt.Mode = {'3D, Stack'};     // mode to use
 BatchOpt.Method = {'Otsu'};       // thresholding algorithm
%BatchOpt.t = [1 1];     // time points, [t1, t2]
 BatchOpt.z = [10 20];    // slices, [z1, z2]
 BatchOpt.x = [10 120];    // slices, [z1, z2]
 BatchOpt.Orientation = 2;     // dataset orientation
 obj.startController('mibHistThresController', [], BatchOpt); // provide BatchOpt as the 3rd parameter into the startController function of mibController class

obj.startController('mibHistThresController');    // standard call for GUI

or

// trigger return of the possible Options using returnBatchOpt function
// using notify syncBatch event
obj.startController('mibHistThresController', [], NaN);

Constructor & Destructor Documentation

mibHistThresController()

mibHistThresController.mibHistThresController	(		mibModel,
			varargin )

References handle.addlistener, handle.fieldnames, mibModel, mibRescaleWidgets(), mibUpdateFontSize(), handle.notify, and updateGUIFromBatchOpt_Shared().

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Member Function Documentation

closeWindow()

function mibHistThresController.closeWindow

(

)

closing mibHistThresController window

References handle.isvalid, and handle.notify.

continueBtn_Callback()

function mibHistThresController.continueBtn_Callback

(

)

perform thresholding

References max, handle.notify, th_concavity(), th_entropy(), th_intermeans_iter(), th_intermodes(), th_maxlik(), th_mean(), th_median(), th_minerror(), th_minerror_iter(), th_minimum(), th_moments(), and th_ptile().

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Method_Callback()

function mibHistThresController.Method_Callback

(

)

callback for change of obj.View.handles.Method

previewBtn_Callback()

function mibHistThresController.previewBtn_Callback

(

)

callback for press of obj.View.handles.previewBtn

References max, handle.notify, th_concavity(), th_entropy(), th_intermeans_iter(), th_intermodes(), th_maxlik(), th_mean(), th_median(), th_minerror(), th_minerror_iter(), th_minimum(), th_moments(), and th_ptile().

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returnBatchOpt()

function mibHistThresController.returnBatchOpt

(

BatchOptOut

)

return structure with Batch Options and possible configurations via the notify syncBatch event Parameters: BatchOptOut: a local structure with Batch Options generated during Continue callback. It may contain more fields than obj.BatchOpt structure

References handle.notify.

updateBatchOptFromGUI()

function mibHistThresController.updateBatchOptFromGUI

(

hObject

)

References updateBatchOptFromGUI_Shared().

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updateWidgets()

function mibHistThresController.updateWidgets

(

)

update widgets of this window

References max, and updateGUIFromBatchOpt_Shared().

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ViewListner_Callback2()

static function mibHistThresController.ViewListner_Callback2 ( obj, src, evnt )

static

Member Data Documentation

BatchOpt

mibHistThresController.BatchOpt

a structure compatible with batch operation, see more in the constructor .showWaitbar - logical, true - show, false - do not show the waitbar .ColorChannel - cell string Ch 1 or Ch 2... the color channel for thresholding

closeEvent

EVENT mibHistThresController.closeEvent

> Description of events event firing when window is closed

Events

closeEvent

listener

mibHistThresController.listener

a cell array with handles to listeners

mibModel

mibHistThresController.mibModel

handles to the model

Referenced by mibHistThresController().

mode

mibHistThresController.mode

morphops mode: mode2d_Slice, mode2d_Stack, mode2d_Dataset, mode3d_Stack, mode3d_Dataset

View

mibHistThresController.View

handle to the view

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The documentation for this class was generated from the following file:

• Classes/@mibHistThresController/mibHistThresController.m