mibStatisticsController Class Reference

a controller class for the get statistics window available via MIB->Menu->Models->Model statistics More...

Inheritance diagram for mibStatisticsController:

Collaboration diagram for mibStatisticsController:

Public Member Functions
	mibStatisticsController (mibModel, contIndex, varargin)
	obj = mibStatisticsController(mibModel, contIndex, varargin) constructor for mibStatisticsController
function	closeWindow ()
	closing mibStatisticsController window
function	returnBatchOpt (BatchOptOut)
	return structure with Batch Options and possible configurations via the notify syncBatch event Parameters: BatchOptOut: a local structure with Batch Options generated during Continue callback. It may contain more fields than obj.BatchOpt structure
function	updateBatchOptFromGUI (hObject)
function	updateWidgets ()
	update widgets of the GUI
function	histScale_Callback ()
	a callback for press of the obj.View.handles.histScale checkbox
function	tableContextMenu_cb (parameter)
	a callback to context menu for obj.View.handles.statTable
function	updateSortingSettings ()
	update settings for sorting the columns of the table obj.sortingDirection obj.sortingColIndex
function	Material_Callback ()
	a callback for obj.View.handles.Material
function	Property_Callback ()
	a callback for obj.View.handles.Property
function	radioButton_Callback (hObject)
	a callback for obj.View.handles.radioButton
function	highlightSelection (object_list, mode, sliceNumbers)
	highlight selected objects
function	statTable_CellSelectionCallback (indices, parameter)
	a callback for click on cell in obj.View.handles.statTable
function	mibStatisticsGUI_WindowButtonDownFcn ()
	a callback for a mouse button press over obj.View.gui
function	Units_Callback ()
	callback for change of the unitCombo combo
function	multipleBtn_Callback ()
	a callback for obj.View.handles.multipleBtn, selecting multiple properties for calculation
function	Multiple_Callback ()
	callback for press of Multiple checkbox
function	exportButton_Callback (batchModeSwitch)
	a callback for obj.View.handles.exportButton Parameters: batchModeSwitch: a logical switch indicating using the function from the batch mode
function	runStatAnalysis_Callback (batchModeSwitch)
	start quantification analysis
function data =	sortBtn_Callback (data)
	sort the table
function	enableStatTable ()
	enable/disable the contents of the statTable
function id =	findChildId (childName)
	find id of a child controller, see more in mibController.findChildId
function	startController (controllerName, varargin)
	start a child controller using provided name, see more in see more in mibController.startController

Static Public Member Functions
static function	ViewListner_Callback2 (obj, src, evnt)
static function	ViewListner_ModelEvent_Callback (obj, src, evnt)
	callback function for detection of mibModel callbacks this function is recommended to use
static function	purgeControllers (obj, src, evnt)
	find index of the child controller and purge it

Public Attributes
	mibModel
	handles to the model
	View
	handle to the view
	anisotropicVoxelsAgree
	check for warning about anisotropic voxels
	availableProperties2D
	cell array with the list of available properties for 2D objects
	availableProperties3D
	cell array with the list of available properties for 3D objects
	availablePropertiesInt
	cell array with the list of available properties for intensity objects
	histLimits
	limits for the histogram
	indices
	indices of selected entries in the statTable
	listener
	a cell array with handles to listeners
	intType
	index of the selected mode for the intensity mode
	obj2DType
	index of the selected mode for the object mode
	obj3DType
	index of the selected mode for the object mode
	runId
	a vector [datasetId, materialId] for which dataset statistics was calculated
	sortingDirection
	a variable to keep sorting status for columns, ascend or descend
	sortingColIndex
	a number with the index of the column to use for sorting (i.e. 1, 2, 3, or 4)
	sortingRowIndex
	after sorting, index in the table that corresponds to obj.STATS index
	statProperties
	list of properties to calculate
	STATS
	a structure with quantification results
	childControllers
	list of opened subcontrollers
	childControllersIds
	a cell array with names of initialized child controllers
	BatchOpt
	a structure compatible with batch operation, see details in the contsructor
EVENT	closeEvent
	> Description of events event firing when window is closed
Public Attributes inherited from handle
	addlistener
	Creates a listener for the specified event and assigns a callback function to execute when the event occurs.
	notify
	Broadcast a notice that a specific event is occurring on a specified handle object or array of handle objects.
	delete
	Handle object destructor method that is called when the object's lifecycle ends.
	disp
	Handle object disp method which is called by the display method. See the MATLAB disp function.
	display
	Handle object display method called when MATLAB software interprets an expression returning a handle object that is not terminated by a semicolon. See the MATLAB display function.
	findobj
	Finds objects matching the specified conditions from the input array of handle objects.
	findprop
	Returns a meta.property objects associated with the specified property name.
	fields
	Returns a cell array of string containing the names of public properties.
	fieldnames
	Returns a cell array of string containing the names of public properties. See the MATLAB fieldnames function.
	isvalid
	Returns a logical array in which elements are true if the corresponding elements in the input array are valid handles. This method is Sealed so you cannot override it in a handle subclass.
	eq
	Relational functions example. See details for more information.
	transpose
	Transposes the elements of the handle object array.
	permute
	Rearranges the dimensions of the handle object array. See the MATLAB permute function.
	reshape
	hanges the dimensions of the handle object array to the specified dimensions. See the MATLAB reshape function.
	sort
	ort the handle objects in any array in ascending or descending order.

Detailed Description

a controller class for the get statistics window available via MIB->Menu->Models->Model statistics

Constructor & Destructor Documentation

mibStatisticsController()

mibStatisticsController.mibStatisticsController	(		mibModel,
			contIndex,
			varargin )

obj = mibStatisticsController(mibModel, contIndex, varargin) constructor for mibStatisticsController

Parameters

mibModel	a handle to mibModel
contIndex	index of the dataset for statistics (1-mask, 2-Exterior, 3, 4 materials of the model)

Required fields of mibModel:

References handle.addlistener, mibModel, and updateBatchOptCombineFields_Shared().

Referenced by startController().

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Member Function Documentation

closeWindow()

function mibStatisticsController.closeWindow

(

)

closing mibStatisticsController window

References handle.isvalid, and handle.notify.

enableStatTable()

function mibStatisticsController.enableStatTable

(

)

enable/disable the contents of the statTable

exportButton_Callback()

function mibStatisticsController.exportButton_Callback

(

batchModeSwitch

)

a callback for obj.View.handles.exportButton Parameters: batchModeSwitch: a logical switch indicating using the function from the batch mode

References handle.disp, handle.fieldnames, mibInputDlg(), STATS, and xlswrite2().

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findChildId()

function id = mibStatisticsController.findChildId

(

childName

)

find id of a child controller, see more in mibController.findChildId

Parameters

childName

name of a child controller

Return values

id	index of the requested child controller or empty if it is not open

highlightSelection()

function mibStatisticsController.highlightSelection	(		object_list,
			mode,
			sliceNumbers )

highlight selected objects

Parameters

object_list	indices of object to highlight
mode	a string Add - add selected objects to the selection layer Remove - remove selected objects from the selection layer Replace - replace the selection layer with selected objects obj2model - generate a new model, where each selected object will be assigned to own index
sliceNumbers	indices of slices for each selected object

References handle.disp, max, min, handle.notify, and handle.reshape.

histScale_Callback()

function mibStatisticsController.histScale_Callback

(

)

a callback for press of the obj.View.handles.histScale checkbox

Material_Callback()

function mibStatisticsController.Material_Callback

(

)

a callback for obj.View.handles.Material

mibStatisticsGUI_WindowButtonDownFcn()

function mibStatisticsController.mibStatisticsGUI_WindowButtonDownFcn

(

)

a callback for a mouse button press over obj.View.gui

References handle.sort.

Multiple_Callback()

function mibStatisticsController.Multiple_Callback

(

)

callback for press of Multiple checkbox

multipleBtn_Callback()

function mibStatisticsController.multipleBtn_Callback

(

)

a callback for obj.View.handles.multipleBtn, selecting multiple properties for calculation

References mibMaskStatsProps(), and handle.sort.

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Property_Callback()

function mibStatisticsController.Property_Callback

(

)

a callback for obj.View.handles.Property

References max, min, and handle.sort.

purgeControllers()

static function mibStatisticsController.purgeControllers ( obj, src, evnt )

static

find index of the child controller and purge it

Required fields of obj:

radioButton_Callback()

function mibStatisticsController.radioButton_Callback

(

hObject

)

a callback for obj.View.handles.radioButton

Parameters

hObject

a handle to the object

Required fields of hObject:

returnBatchOpt()

function mibStatisticsController.returnBatchOpt

(

BatchOptOut

)

return structure with Batch Options and possible configurations via the notify syncBatch event Parameters: BatchOptOut: a local structure with Batch Options generated during Continue callback. It may contain more fields than obj.BatchOpt structure

References handle.notify.

runStatAnalysis_Callback()

function mibStatisticsController.runStatAnalysis_Callback

(

batchModeSwitch

)

start quantification analysis

Parameters

batchModeSwitch

logical switch, whether or not the batch mode is used

References handle.fieldnames, max, mibCalcCurveLength(), min, handle.notify, regionprops3mib(), handle.sort, and STATS.

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sortBtn_Callback()

function data = mibStatisticsController.sortBtn_Callback

(

data

)

sort the table

Parameters

data	a matrix with contents of the table

References handle.sort.

startController()

function mibStatisticsController.startController	(		controllerName,
			varargin )

start a child controller using provided name, see more in see more in mibController.startController

Parameters

controllerName	a string with name of a child controller, for example, mibImageAdjController
varargin	additional optional controllers or parameters

References handle.addlistener, and mibStatisticsController().

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statTable_CellSelectionCallback()

function mibStatisticsController.statTable_CellSelectionCallback	(		indices,
			parameter )

a callback for click on cell in obj.View.handles.statTable

Parameters

indices	indices of selected cells
parameter	a string with additional parameter, obj2model, generate a new model, where each selected object will be assigned to own index skip to do not highlight selected objects

References indices, min, and handle.notify.

tableContextMenu_cb()

function mibStatisticsController.tableContextMenu_cb

(

parameter

)

a callback to context menu for obj.View.handles.statTable

Parameters

parameter

a string that specify parameter for the callback mean - calculate an average of all selected numbers sum - calculate a sum of all selected numbers min - find the minimum value of all selected numbers max - find the maximum value of all selected numbers crop - crop selected objects to a file or MATLAB hist - show histogram distribution for the selected objects newLabel, addLabel, removeLabel - generate or update the MIB annotations copyColumn - copy selected column to the clipboard colormap - color materials based on their value

References handle.findobj, max, mibInputDlg(), mibInputMultiDlg(), min, handle.notify, and num2clip().

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Units_Callback()

function mibStatisticsController.Units_Callback

(

)

callback for change of the unitCombo combo

updateBatchOptFromGUI()

function mibStatisticsController.updateBatchOptFromGUI

(

hObject

)

References updateBatchOptFromGUI_Shared().

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updateSortingSettings()

function mibStatisticsController.updateSortingSettings

(

)

update settings for sorting the columns of the table obj.sortingDirection obj.sortingColIndex

updateWidgets()

function mibStatisticsController.updateWidgets

(

)

update widgets of the GUI

References max.

ViewListner_Callback2()

static function mibStatisticsController.ViewListner_Callback2 ( obj, src, evnt )

static

ViewListner_ModelEvent_Callback()

static function mibStatisticsController.ViewListner_ModelEvent_Callback ( obj, src, evnt )

static

callback function for detection of mibModel callbacks this function is recommended to use

Required fields of evnt:

Required fields of obj:

References handle.fieldnames.

Member Data Documentation

anisotropicVoxelsAgree

mibStatisticsController.anisotropicVoxelsAgree

check for warning about anisotropic voxels

availableProperties2D

mibStatisticsController.availableProperties2D

cell array with the list of available properties for 2D objects

availableProperties3D

mibStatisticsController.availableProperties3D

cell array with the list of available properties for 3D objects

availablePropertiesInt

mibStatisticsController.availablePropertiesInt

cell array with the list of available properties for intensity objects

BatchOpt

mibStatisticsController.BatchOpt

a structure compatible with batch operation, see details in the contsructor

childControllers

mibStatisticsController.childControllers

list of opened subcontrollers

childControllersIds

mibStatisticsController.childControllersIds

a cell array with names of initialized child controllers

closeEvent

EVENT mibStatisticsController.closeEvent

> Description of events event firing when window is closed

Events

closeEvent

histLimits

mibStatisticsController.histLimits

limits for the histogram

indices

mibStatisticsController.indices

indices of selected entries in the statTable

Referenced by statTable_CellSelectionCallback().

intType

mibStatisticsController.intType

index of the selected mode for the intensity mode

listener

mibStatisticsController.listener

a cell array with handles to listeners

mibModel

mibStatisticsController.mibModel

handles to the model

Referenced by mibStatisticsController().

obj2DType

mibStatisticsController.obj2DType

index of the selected mode for the object mode

obj3DType

mibStatisticsController.obj3DType

index of the selected mode for the object mode

runId

mibStatisticsController.runId

a vector [datasetId, materialId] for which dataset statistics was calculated

sortingColIndex

mibStatisticsController.sortingColIndex

a number with the index of the column to use for sorting (i.e. 1, 2, 3, or 4)

sortingDirection

mibStatisticsController.sortingDirection

a variable to keep sorting status for columns, ascend or descend

sortingRowIndex

mibStatisticsController.sortingRowIndex

after sorting, index in the table that corresponds to obj.STATS index

statProperties

mibStatisticsController.statProperties

list of properties to calculate

STATS

mibStatisticsController.STATS

a structure with quantification results

Referenced by exportButton_Callback(), and runStatAnalysis_Callback().

View

mibStatisticsController.View

handle to the view

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The documentation for this class was generated from the following file:

• Classes/@mibStatisticsController/mibStatisticsController.m