mibSupervoxelClassifierController Class Reference

class is responsible for showing the supervoxel classifier, available from MIB->Menu->Tools->Classifiers->Supervoxel classification More...

Inheritance diagram for mibSupervoxelClassifierController:

Collaboration diagram for mibSupervoxelClassifierController:

Public Member Functions
	mibSupervoxelClassifierController (mibModel)
function	closeWindow ()
	closing mibSupervoxelClassifierController window
function	updateWidgets ()
	update widgets of this window
function	tempDirSelectBtn_Callback ()
	select directory for temp data
function	classifierFilenameEdit_Callback ()
	callback for modification of filename for classifier
function	updateLoglist (addText)
	update log list with information about the progress
function	resetDimsBtn_Callback ()
	reset area for segmentation
function	checkDimensions (hObject, parameter)
	check dimensions for the area to be segmented Parameters: hObject: handle of the calling object parameter: dimension to check
function	subAreaFromSelectionBtn_Callback ()
	get area for segmentation from the selection layer
function	currentViewBtn_Callback ()
	update area for segmentation from the current view
function	superpixelsBtn_Callback ()
	calculate superpixels
function	previewSuperpixelsBtn_Callback ()
	preview supepixels/voxels
function	calcFeaturesBtn_Callback ()
	calculate features of superpixels/supervoxels
function	trainClassifierBtn_Callback ()
	train random forest
function	wipeTempDirBtn_Callback ()
	wipe temp directory
function	predictDatasetBtn_Callback ()
	predict dataset using the random forest classifier
function	loadClassifierBtn_Callback ()
	load classifier from the disk

Static Public Member Functions
static function	ViewListner_Callback2 (obj, src, evnt)

Public Attributes
	mibModel
	handles to the model
	View
	handle to the view
	listener
	a cell array with handles to listeners
	maxNumberOfSamplesPerClass
	max number of samples per class
	slic
	a structure with processed slic images .slic = []; % a field for superpixels, [height, width, depth] .noPix = []; % a field for number of pixels, [depth] for 2d, or a single number for 3d .properties = []; % a substructure with properties, only for obj.slic.properties(1) .properties.bb [xMin xMax yMin yMax zMin zMax] .properties.mode 2d or 3d .properties.binVal, binning values: (xy z) .properties.colCh, a color channel used for SLIC .properties.spSize, size of superpixels .properties.spCompact, compactness of superpixels
	FEATURES
	a structure for features
	Forest
	classifier
EVENT	closeEvent
	> Description of events event firing when window is closed
Public Attributes inherited from handle
	addlistener
	Creates a listener for the specified event and assigns a callback function to execute when the event occurs.
	notify
	Broadcast a notice that a specific event is occurring on a specified handle object or array of handle objects.
	delete
	Handle object destructor method that is called when the object's lifecycle ends.
	disp
	Handle object disp method which is called by the display method. See the MATLAB disp function.
	display
	Handle object display method called when MATLAB software interprets an expression returning a handle object that is not terminated by a semicolon. See the MATLAB display function.
	findobj
	Finds objects matching the specified conditions from the input array of handle objects.
	findprop
	Returns a meta.property objects associated with the specified property name.
	fields
	Returns a cell array of string containing the names of public properties.
	fieldnames
	Returns a cell array of string containing the names of public properties. See the MATLAB fieldnames function.
	isvalid
	Returns a logical array in which elements are true if the corresponding elements in the input array are valid handles. This method is Sealed so you cannot override it in a handle subclass.
	eq
	Relational functions example. See details for more information.
	transpose
	Transposes the elements of the handle object array.
	permute
	Rearranges the dimensions of the handle object array. See the MATLAB permute function.
	reshape
	hanges the dimensions of the handle object array to the specified dimensions. See the MATLAB reshape function.
	sort
	ort the handle objects in any array in ascending or descending order.

Detailed Description

class is responsible for showing the supervoxel classifier, available from MIB->Menu->Tools->Classifiers->Supervoxel classification

Constructor & Destructor Documentation

mibSupervoxelClassifierController()

mibSupervoxelClassifierController.mibSupervoxelClassifierController

(

mibModel

)

References handle.addlistener, mibModel, mibRescaleWidgets(), and mibUpdateFontSize().

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Member Function Documentation

calcFeaturesBtn_Callback()

function mibSupervoxelClassifierController.calcFeaturesBtn_Callback

(

)

calculate features of superpixels/supervoxels

References imRAG(), max, membraneFeatures(), mibResize3d(), min, handle.reshape, and slic.

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checkDimensions()

function mibSupervoxelClassifierController.checkDimensions	(		hObject,
			parameter )

check dimensions for the area to be segmented Parameters: hObject: handle of the calling object parameter: dimension to check

Required fields of hObject:

References max, and min.

classifierFilenameEdit_Callback()

function mibSupervoxelClassifierController.classifierFilenameEdit_Callback

(

)

callback for modification of filename for classifier

References slic.

closeWindow()

function mibSupervoxelClassifierController.closeWindow

(

)

closing mibSupervoxelClassifierController window

References handle.isvalid, and handle.notify.

currentViewBtn_Callback()

function mibSupervoxelClassifierController.currentViewBtn_Callback

(

)

update area for segmentation from the current view

loadClassifierBtn_Callback()

function mibSupervoxelClassifierController.loadClassifierBtn_Callback

(

)

load classifier from the disk

References mib_uigetfile().

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predictDatasetBtn_Callback()

function mibSupervoxelClassifierController.predictDatasetBtn_Callback

(

)

predict dataset using the random forest classifier

References classRF_predict(), mibResize3d(), and handle.notify.

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previewSuperpixelsBtn_Callback()

function mibSupervoxelClassifierController.previewSuperpixelsBtn_Callback

(

)

preview supepixels/voxels

References mibResize3d(), handle.notify, and slic.

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resetDimsBtn_Callback()

function mibSupervoxelClassifierController.resetDimsBtn_Callback

(

)

reset area for segmentation

subAreaFromSelectionBtn_Callback()

function mibSupervoxelClassifierController.subAreaFromSelectionBtn_Callback

(

)

get area for segmentation from the selection layer

superpixelsBtn_Callback()

function mibSupervoxelClassifierController.superpixelsBtn_Callback

(

)

calculate superpixels

References max, mibResize3d(), and min.

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tempDirSelectBtn_Callback()

function mibSupervoxelClassifierController.tempDirSelectBtn_Callback

(

)

select directory for temp data

trainClassifierBtn_Callback()

function mibSupervoxelClassifierController.trainClassifierBtn_Callback

(

)

train random forest

References classRF_train(), and mibResize3d().

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updateLoglist()

function mibSupervoxelClassifierController.updateLoglist

(

addText

)

update log list with information about the progress

Parameters

addText

a string with the text to show in the log list

updateWidgets()

function mibSupervoxelClassifierController.updateWidgets

(

)

update widgets of this window

References max, and handle.notify.

ViewListner_Callback2()

static function mibSupervoxelClassifierController.ViewListner_Callback2 ( obj, src, evnt )

static

wipeTempDirBtn_Callback()

function mibSupervoxelClassifierController.wipeTempDirBtn_Callback

(

)

wipe temp directory

Member Data Documentation

closeEvent

EVENT mibSupervoxelClassifierController.closeEvent

> Description of events event firing when window is closed

Events

closeEvent

FEATURES

mibSupervoxelClassifierController.FEATURES

a structure for features

Forest

mibSupervoxelClassifierController.Forest

classifier

listener

mibSupervoxelClassifierController.listener

a cell array with handles to listeners

maxNumberOfSamplesPerClass

mibSupervoxelClassifierController.maxNumberOfSamplesPerClass

max number of samples per class

mibModel

mibSupervoxelClassifierController.mibModel

handles to the model

Referenced by mibSupervoxelClassifierController().

slic

mibSupervoxelClassifierController.slic

a structure with processed slic images .slic = []; % a field for superpixels, [height, width, depth] .noPix = []; % a field for number of pixels, [depth] for 2d, or a single number for 3d .properties = []; % a substructure with properties, only for obj.slic.properties(1) .properties.bb [xMin xMax yMin yMax zMin zMax] .properties.mode 2d or 3d .properties.binVal, binning values: (xy z) .properties.colCh, a color channel used for SLIC .properties.spSize, size of superpixels .properties.spCompact, compactness of superpixels

Referenced by calcFeaturesBtn_Callback(), classifierFilenameEdit_Callback(), and previewSuperpixelsBtn_Callback().

View

mibSupervoxelClassifierController.View

handle to the view

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The documentation for this class was generated from the following file:

• Classes/@mibSupervoxelClassifierController/mibSupervoxelClassifierController.m