class is a template class for using with GUI developed using appdesigner of Matlab More...

Inheritance diagram for mibVolRenAppController:

Collaboration diagram for mibVolRenAppController:

Public Member Functions
	mibVolRenAppController (mibModel, varargin)
	class constructor

function	updateVolumeRenderingStyle ()
	update Volume Rendering Style

function	updateIsovalue (newIsovalue)
	update IsosurfaceValue of the volume

function	alphaAxesButtonDown (event)
	buttom down event above obj.View.handles.alphaAxes

function	updateBackgroundColor (event)
	update background color settings

function	updateColormap (event)
	select and update colormap

function	generateColorMap ()
	generate obj.volumeColormap from the selected obj.Settings.Volume.colormapName and obj.Settings.Volume.colormapInvert

function	updateCameraWidgets ()
	update widgets that describe position of the camera

function	menuChangeView (event)
	callback for selection of views

function	closeWindow ()
	closing mibVolRenAppController window

function	updateWidgets ()
	update widgets of this window

function	updateKeyFrameTable ()
	update obj.View.handles.keyFrameTable

function	addAnimationKeyFrame (posIndex)
	add/insert a key frame

function	keyFrameTable_CellSelection (indices)
	callback for selection of a cell in obj.View.handles.keyFrameTable

function	surfaceTable_CellSelection (indices)
	callback for selection of a cell in obj.View.handles.surfaceTable

function	modelTable_CellSelection (indices)
	callback for selection of a cell in obj.View.handles.modelTable

function	loadAnimationPath ()
	load animation path from a file

function	saveAnimationPath ()
	save animation path to a file

function	deleteAllAnimationKeyFrames ()
	delete all key frames

function	previewAnimation (noFrames)
	preview animation

function positions =	generatePositionsForKeyFramesAnimation (noFrames, options)
	generate camera positions from the key frames

function	updateAnimationNumberOfFrames (noFrames)
	update number of frames in the animation

function	modelTable_cm_Callback (event)
	callback for modelTable context menu

function	surfaceTable_cm_Callback (event)
	callback for surfaceTable context menu

function	keyFrameTable_cm_Callback (event)
	callback for keyFrameTable context menu

function	alphaCurveOperations (event)
	callback for press of buttons in the alpha curve tab

function	plotAlphaPlot ()
	draw alpha plot

function	toggleViewerSettings (event)
	toggle switch on/off for some of the viewer parameters

function	updateScalingTransform (pixSize)
	generate tform (obj.scalingTransform) to scale the dataset upon loading to have its units in um

function imgOut =	grabFrame (width, height, options)
	grab a frame from the volume viewer

function	prepareWindowForGrabFrame (width, height)
	prepare window to grab a frame

function	restoreWindowAfterGrabFrame ()
	restore widget sizes after the snapshot

function	makeAnimation (mode)
	start making movie window

function status =	grabVolume (volumeType, colorChannel)
	grab the currently displayed volume to the 3D volume viewer

function	recalculateAlphamap (transparentVolume)
	recalculate obj.volume.Alphamap

function	spinDataset ()
	spin dataset (rotate camera around the dataset)

function positions =	generatePositionsForSpinAnimation (noFrames, options)
	generate camera positions for the spin animation

function	makeSnapshop ()
	make snapshot

function	modelUpdateOverlay (overlayType, materialId)
	grab the model from MIB and assign it as an overlay for the volume

function	updateOverlayRenderingStyle ()
	update rendering style for overlays

function	updateSurfaceTable ()
	update obj.View.handles.surfaceTable

function	modelHideAllMaterials (hideMaterialsSwitch)
	hide all materials of the shown model

function	updateModelTable ()
	update obj.View.handles.modelTable after loading of the model

function	surfaceTableCellEdit (event)
	callback for update of values in obj.View.handles.modelTable

function	modelTableCellEdit (event)
	callback for update of values in obj.View.handles.modelTable

function	updateCameraPosition (event)

function	changeSlice (sourceWidget, value)
	callback for change of the slice value on obj.View.handles.xSliderEdit / ySliderEdit / zSliderEdit

function	showVolume (showSwitch)
	toggle showing of the volume

function	transparentVolume (transparentSwitch)
	make volume transparent, which still shows the overlay model

function	showHelp ()
	show help

Static Public Member Functions
static function	ViewListner_Callback (obj, src, evnt)

static function	cameraListner_Callback (obj, src, evnt)
	listener callback for camera moving

Public Attributes
	mibModel
	handles to mibModel

	View
	handle to the view / mibVolRenAppGUI

	listener
	a cell array with handles to listeners

	BatchOpt
	a structure compatible with batch operation name of each field should be displayed in a tooltip of GUI it is recommended that the Tags of widgets match the name of the fields in this structure .Parameter - [editbox], char/string .Checkbox - [checkbox], logical value true or false .Dropdown{1} - [dropdown], cell string for the dropdown .Dropdown{2} - [optional], an array with possible options .Radio - [radiobuttons], cell string `Radio1` or `Radio2`... .ParameterNumeric{1} - [numeric editbox], cell with a number .ParameterNumeric{2} - [optional], vector with limits [min, max] .ParameterNumeric{3} - [optional], string `on` - to round the value, `off` to do not round the value

	childControllers
	list of opened subcontrollers

	childControllersIds
	a cell array with names of initialized child controllers

	alphaPlotHandle
	handle to the alpha plot

	animationFilename
	template for the animation filename

	animationPath
	a structure with animation path .CameraPosition - a matrix of camera positions [keyFrame, x,y,z] .CameraUpVector - a matrix of camera up vectors [keyFrame, x,y,z] .CameraTarget - a matrix of camera target positions [keyFrame, x,y,z]

	animationPreviewRunning
	logical switch defining whether the animation is previewed

	defaultView
	a structure with the default camera position

	figPosStored
	a structure with stored positions of the widgets for making snapshots .mibVolRenAppFigure -> position of the main figure .mainGridLayoutRowHeights -> heights of rows in obj.View.handles.mainGridLayout

	keyFrameTableIndex
	index of the selected key frame

	matlabVersion
	current version of MATLAB

	maxIntValue
	max integer value of the loaded volume

	noOverlayMaterials
	number of materials shown in the overlay

	overlayShownMaterials
	a vector of shown (true) or hidden (false) materials in the model overlay

	overlayAlpha
	a vector with alpha values for overlay materials

	modelTableIndex
	index of the selected material in the modelTable

	scalingTransform
	tform to scale the dataset upon loading to have its units in um

	Settings
	a structure with settings, initialized from obj.mibModel.preferences.VolRen; .volumeAlphaCurve.x = [0 .3 .7 1]; .volumeAlphaCurve.y = [1 1 0 0]; .markerSize - marker size for the alpha plot .BackgroundColor - color for the background .colormapName - a string with default colormap, or `custom` (not yet implemented) .colormapInvert - true/false, invert or not the colormap .animationPath - a structure with animation path .noFramesPreview - number of frames for the preview

	surfList
	a cell array of generated surfaces

	surfListAlpha
	an array of alpha values for the generated surfaces

	surfaceTableIndex
	index of the selected row in the surfaceTable

	viewer
	handle to the main viewer widget

	volume
	main image volume

	volumeAlphaCurve
	a structure with alpha curve details .x - vector of intensity points [0 - 1] .y - value of alpha for each intensity point [0 - 1] .alphamap - calculated alpha map used in volshow .activePoint - selected point

	volumeColormap
	vector with the colormap

	volumeScaleFactor
	scale factor to downsample the datasets, below 1

EVENT	closeEvent
	> Description of events event firing when window is closed

Public Attributes inherited from handle
	addlistener
	Creates a listener for the specified event and assigns a callback function to execute when the event occurs.

	notify
	Broadcast a notice that a specific event is occurring on a specified handle object or array of handle objects.

	delete
	Handle object destructor method that is called when the object's lifecycle ends.

	disp
	Handle object disp method which is called by the display method. See the MATLAB disp function.

	display
	Handle object display method called when MATLAB software interprets an expression returning a handle object that is not terminated by a semicolon. See the MATLAB display function.

	findobj
	Finds objects matching the specified conditions from the input array of handle objects.

	findprop
	Returns a meta.property objects associated with the specified property name.

	fields
	Returns a cell array of string containing the names of public properties.

	fieldnames
	Returns a cell array of string containing the names of public properties. See the MATLAB fieldnames function.

	isvalid
	Returns a logical array in which elements are true if the corresponding elements in the input array are valid handles. This method is Sealed so you cannot override it in a handle subclass.

	eq
	Relational functions example. See details for more information.

	transpose
	Transposes the elements of the handle object array.

	permute
	Rearranges the dimensions of the handle object array. See the MATLAB permute function.

	reshape
	hanges the dimensions of the handle object array to the specified dimensions. See the MATLAB reshape function.

	sort
	ort the handle objects in any array in ascending or descending order.

Detailed Description

class is a template class for using with GUI developed using appdesigner of Matlab

obj.startController('mibVolRenAppController'); // as GUI tool

or

// a code below was used for mibImageArithmeticController
BatchOpt.Parameter = 'test';  // fill edit boxes as strings
BatchOpt.Checkbox = true;     // fill checkboxes with logicals: true/false
BatchOpt.Popup = {'value'};        // value for the popups as a cell
BatchOpt.Radio = {'Radio1'};          // selection of radio buttons, as cell with the handle of the target radio button
BatchOpt.showWaitbar = true;  // show or not the waitbar
obj.startController('mibVolRenAppController', [], BatchOpt); // start mibVolRenAppController in the batch mode

or

// trigger return of the possible Options using returnBatchOpt function
// using notify syncBatch event
obj.startController('mibVolRenAppController', [], NaN);

Constructor & Destructor Documentation

◆ mibVolRenAppController()

mibVolRenAppController.mibVolRenAppController	(		mibModel,
			varargin )

class constructor

Parameters

mibModel	a handle to mibModel class
varargin	mibVolRenAppController ( ..., options ) mibVolRenAppController.mibVolRenAppController mibVolRenAppController(mibModel, varargin) class constructor Definition mibVolRenAppController.m:318 Required Parameters for varargin: options a structure with optional initialization parameters .Settings - settings for initialization of the volviewer

Required fields of mibModel:

References handle.addlistener, handle.fieldnames, mibModel, mibUpdateFontSize(), and moveWindowOutside().

Here is the call graph for this function:

Member Function Documentation

◆ addAnimationKeyFrame()

function mibVolRenAppController.addAnimationKeyFrame ( posIndex )

add/insert a key frame

Parameters

posIndex [optional] position of the key frame, when 1 - in the beginning of the animation sequence

◆ alphaAxesButtonDown()

function mibVolRenAppController.alphaAxesButtonDown ( event )

buttom down event above obj.View.handles.alphaAxes

References max, min, and handle.sort.

◆ alphaCurveOperations()

function mibVolRenAppController.alphaCurveOperations ( event )

callback for press of buttons in the alpha curve tab

Parameters

event a handle of the pressed button .event.Source.Tag -> resetAlphaCurve .event.Source.Tag -> invertAlphaCurve

Required fields of event:

References handle.sort.

◆ cameraListner_Callback()

static function mibVolRenAppController.cameraListner_Callback	(	obj,
		src,
		evnt )

static

listener callback for camera moving

Required fields of obj:

◆ changeSlice()

function mibVolRenAppController.changeSlice	(		sourceWidget,
			value )

callback for change of the slice value on obj.View.handles.xSliderEdit / ySliderEdit / zSliderEdit

Parameters

sourceWidget	tag (str) of the widgets that was modified, `xSliderEdit`, `ySliderEdit`, `zSliderEdit`
value	new value

◆ closeWindow()

function mibVolRenAppController.closeWindow ( )

closing mibVolRenAppController window

References handle.isvalid, and handle.notify.

◆ deleteAllAnimationKeyFrames()

function mibVolRenAppController.deleteAllAnimationKeyFrames ( )

delete all key frames

◆ generateColorMap()

function mibVolRenAppController.generateColorMap ( )

generate obj.volumeColormap from the selected obj.Settings.Volume.colormapName and obj.Settings.Volume.colormapInvert

◆ generatePositionsForKeyFramesAnimation()

function positions = mibVolRenAppController.generatePositionsForKeyFramesAnimation	(		noFrames,
			options )

generate camera positions from the key frames

Parameters

noFrames number of frames options - an optional structure with additional parameters .back_and_forth - a switch to make animations in both forward and reverse orientation

Return values

positions a structure with camera positions for each frame of the resulting movie .CameraUpVector - an array of camera-up vectors for each time point or a single vector .CameraTarget - an array of camera-target vectors for each time point or a single vector .CameraPosition - a vector for each time point

Required fields of options:

Generated fields of positions:

◆ generatePositionsForSpinAnimation()

function positions = mibVolRenAppController.generatePositionsForSpinAnimation	(		noFrames,
			options )

generate camera positions for the spin animation

Parameters

noFrames	number of frames
options	a structure with optional parameters .back_and_forth - a switch to make animations in both forward and reverse orientation .clockwise - a switch 1 - clockwise, 0 - anticlockwise rotation .rotAxis - a number with rotation axis, 3-`z`, 1-`x`, 2-`y` Return values:
positions	a structure with camera positions for each frame .CameraUpVector - an array of camera-up vectors for each time point or a single vector .CameraTarget - an array of camera-target vectors for each time point or a single vector .CameraPosition - a vector for each time point

Required fields of options:

Generated fields of positions:

◆ grabFrame()

function imgOut = mibVolRenAppController.grabFrame	(	width,
		height,
		options )

grab a frame from the volume viewer

Parameters width: width of the snapshot, can be empty height: height of the snapshot, can be empty options: [optional] structure with extra parameters .resizeWindow - a switch, 1-resize window, 0-do not resize window, used for animations .showWaitbar - show or not waitbar .hWaitbar - a handle to existing waitbar .waitbarProgress - a fraction for the waitbar position

Required fields of options:

Examples:

// for animations
obj.prepareWindowForGrabFrame(width, height);     // resize widgets
options.resizeWindow = 0; // do not resize the window during the animation
for i=1:100
  // change view
  imgOut = obj.extraController.grabFrame(width, height, options);
end
obj.extraController.restoreWindowAfterGrabFrame();    // restore widget size

// as taken from mibSnapshotController, used for snapshots

imgOut = obj.extraController.grabFrame(width, height);

◆ grabVolume()

function status = mibVolRenAppController.grabVolume	(		volumeType,
			colorChannel )

grab the currently displayed volume to the 3D volume viewer

Parameters

volumeType	[default: `image`] string with type of the volume to grab: `image`,`model`, `selection`, `mask`
colorChannel	[default: 1] index of the color channel or material to grab Return values:
status	1 - success, 0 - cancel

References max, mibInputMultiDlg(), mibResize3d(), and handle.permute.

Here is the call graph for this function:

◆ keyFrameTable_CellSelection()

function mibVolRenAppController.keyFrameTable_CellSelection ( indices )

callback for selection of a cell in obj.View.handles.keyFrameTable

◆ keyFrameTable_cm_Callback()

function mibVolRenAppController.keyFrameTable_cm_Callback ( event )

callback for keyFrameTable context menu

Parameters

event a handle of the pressed button .event.Source.Tag -> keyFrameTable_cm_jumpToKeyFrame, jump to the selected key frame and update the view .event.Source.Tag -> keyFrameTable_cm_insertKeyFrame, insert a key frame to the current position .event.Source.Tag -> keyFrameTable_cm_replaceKeyFrame, replace the selected key frame .event.Source.Tag -> keyFrameTable_cm_removeKeyFrame, remove the key frame from the current position;

Required fields of event:

◆ loadAnimationPath()

function mibVolRenAppController.loadAnimationPath ( )

load animation path from a file

References mib_uigetfile().

Here is the call graph for this function:

◆ makeAnimation()

function mibVolRenAppController.makeAnimation ( mode )

start making movie window

Parameters mode: a string with the desired animation type, spin - to spin around selected axis animation - to animate the scene using key frames

◆ makeSnapshop()

function mibVolRenAppController.makeSnapshop ( )

make snapshot

◆ menuChangeView()

function mibVolRenAppController.menuChangeView ( event )

callback for selection of views

Parameters

event a handle to the selected widget event.Source.Tag = menuDefaultView -> show the default view event.Source.Tag = menuXYview -> show the XY view event.Source.Tag = menuXZview -> show the XZ view event.Source.Tag = menuYZview -> show the YZ view

Required fields of event:

◆ modelHideAllMaterials()

function mibVolRenAppController.modelHideAllMaterials ( hideMaterialsSwitch )

hide all materials of the shown model

Parameters

value [logical, optional], switch to hide (true) or show materials (false)

◆ modelTable_CellSelection()

function mibVolRenAppController.modelTable_CellSelection ( indices )

callback for selection of a cell in obj.View.handles.modelTable

◆ modelTable_cm_Callback()

function mibVolRenAppController.modelTable_cm_Callback ( event )

callback for modelTable context menu

Parameters

event a handle of the pressed button .event.Source.Tag -> modelTable_cm_generateSurface, generate surface from the selected material

Required fields of event:

◆ modelTableCellEdit()

function mibVolRenAppController.modelTableCellEdit ( event )

callback for update of values in obj.View.handles.modelTable

Required fields of event:

◆ modelUpdateOverlay()

function mibVolRenAppController.modelUpdateOverlay	(		overlayType,
			materialId )

grab the model from MIB and assign it as an overlay for the volume

Parameters

overlayType	string, type of the overlay to show, `model` - the model layer `mask` - the mask layer `selection` - the selection layer
materialId	index of material of the model, use NaN to get all materials

References mibResize3d().

Here is the call graph for this function:

◆ plotAlphaPlot()

function mibVolRenAppController.plotAlphaPlot ( )

draw alpha plot

◆ prepareWindowForGrabFrame()

function mibVolRenAppController.prepareWindowForGrabFrame	(		width,
			height )

prepare window to grab a frame

Examples:

// as taken from mibSnapshotController
obj.extraController.prepareWindowForGrabFrame(width, height);
imgOut = obj.extraController.grabFrame(width, height);
obj.extraController.restoreWindowAfterGrabFrame();

◆ previewAnimation()

function mibVolRenAppController.previewAnimation ( noFrames )

preview animation

◆ recalculateAlphamap()

function mibVolRenAppController.recalculateAlphamap ( transparentVolume )

recalculate obj.volume.Alphamap

Parameters

transparentVolume [default false] when true, make the volume transparent

References transparentVolume().

Here is the call graph for this function:

◆ restoreWindowAfterGrabFrame()

function mibVolRenAppController.restoreWindowAfterGrabFrame ( )

restore widget sizes after the snapshot

◆ saveAnimationPath()

function mibVolRenAppController.saveAnimationPath ( )

save animation path to a file

◆ showHelp()

function mibVolRenAppController.showHelp ( )

show help

◆ showVolume()

function mibVolRenAppController.showVolume ( showSwitch )

toggle showing of the volume

◆ spinDataset()

function mibVolRenAppController.spinDataset ( )

spin dataset (rotate camera around the dataset)

◆ surfaceTable_CellSelection()

function mibVolRenAppController.surfaceTable_CellSelection ( indices )

callback for selection of a cell in obj.View.handles.surfaceTable

◆ surfaceTable_cm_Callback()

function mibVolRenAppController.surfaceTable_cm_Callback ( event )

callback for surfaceTable context menu

Parameters

event a handle of the pressed button .event.Source.Tag -> surfaceTable_cm_saveSurface, save surface to a file in STL format .event.Source.Tag -> surfaceTable_cm_removeSurface, delete surface from the viewer

Required fields of event:

References stlwrite().

Here is the call graph for this function:

◆ surfaceTableCellEdit()

function mibVolRenAppController.surfaceTableCellEdit ( event )

callback for update of values in obj.View.handles.modelTable

Required fields of event:

◆ toggleViewerSettings()

function mibVolRenAppController.toggleViewerSettings ( event )

toggle switch on/off for some of the viewer parameters

Paramters: event: handle to the pressed widget

Required fields of event:

◆ transparentVolume()

function mibVolRenAppController.transparentVolume ( transparentSwitch )

make volume transparent, which still shows the overlay model

References transparentVolume().

Referenced by recalculateAlphamap(), and transparentVolume().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ updateAnimationNumberOfFrames()

function mibVolRenAppController.updateAnimationNumberOfFrames ( noFrames )

update number of frames in the animation

◆ updateBackgroundColor()

function mibVolRenAppController.updateBackgroundColor ( event )

update background color settings

Parameters

event a structure event generated upon selection of the operation to perform

Required fields of event:

◆ updateCameraPosition()

function mibVolRenAppController.updateCameraPosition ( event )

References handle.isvalid.

◆ updateCameraWidgets()

function mibVolRenAppController.updateCameraWidgets ( )

update widgets that describe position of the camera

References handle.isvalid.

◆ updateColormap()

function mibVolRenAppController.updateColormap ( event )

select and update colormap

Parameter: event: a handle to the selected widget event.Source.Tag == colormapName -> string with the name of the selected colormap event.Source.Tag == invertColormap -> logical, indicating inversion of the color map

Required fields of event:

◆ updateIsovalue()

function mibVolRenAppController.updateIsovalue ( newIsovalue )

update IsosurfaceValue of the volume

◆ updateKeyFrameTable()

function mibVolRenAppController.updateKeyFrameTable ( )

update obj.View.handles.keyFrameTable

◆ updateModelTable()

function mibVolRenAppController.updateModelTable ( )

update obj.View.handles.modelTable after loading of the model

◆ updateOverlayRenderingStyle()

function mibVolRenAppController.updateOverlayRenderingStyle ( )

update rendering style for overlays

◆ updateScalingTransform()

function mibVolRenAppController.updateScalingTransform ( pixSize )

generate tform (obj.scalingTransform) to scale the dataset upon loading to have its units in um

Required fields of pixSize:

◆ updateSurfaceTable()

function mibVolRenAppController.updateSurfaceTable ( )

update obj.View.handles.surfaceTable

◆ updateVolumeRenderingStyle()

function mibVolRenAppController.updateVolumeRenderingStyle ( )

update Volume Rendering Style

Parameters

style string with new rendering style: VolumeRendering, MaximumIntensityProjection, MinimumIntensityProjection, GradientOpacity, Isosurface, SlicePlanes

◆ updateWidgets()

function mibVolRenAppController.updateWidgets ( )

update widgets of this window

◆ ViewListner_Callback()

static function mibVolRenAppController.ViewListner_Callback	(	obj,
		src,
		evnt )

static

References max.

Member Data Documentation

◆ alphaPlotHandle

mibVolRenAppController.alphaPlotHandle

handle to the alpha plot

◆ animationFilename

mibVolRenAppController.animationFilename

template for the animation filename

◆ animationPath

mibVolRenAppController.animationPath

a structure with animation path .CameraPosition - a matrix of camera positions [keyFrame, x,y,z] .CameraUpVector - a matrix of camera up vectors [keyFrame, x,y,z] .CameraTarget - a matrix of camera target positions [keyFrame, x,y,z]

◆ animationPreviewRunning

mibVolRenAppController.animationPreviewRunning

logical switch defining whether the animation is previewed

◆ BatchOpt

mibVolRenAppController.BatchOpt

a structure compatible with batch operation name of each field should be displayed in a tooltip of GUI it is recommended that the Tags of widgets match the name of the fields in this structure .Parameter - [editbox], char/string .Checkbox - [checkbox], logical value true or false .Dropdown{1} - [dropdown], cell string for the dropdown .Dropdown{2} - [optional], an array with possible options .Radio - [radiobuttons], cell string Radio1 or Radio2... .ParameterNumeric{1} - [numeric editbox], cell with a number .ParameterNumeric{2} - [optional], vector with limits [min, max] .ParameterNumeric{3} - [optional], string on - to round the value, off to do not round the value

◆ childControllers

mibVolRenAppController.childControllers

list of opened subcontrollers

◆ childControllersIds

mibVolRenAppController.childControllersIds

a cell array with names of initialized child controllers

◆ closeEvent

EVENT mibVolRenAppController.closeEvent

> Description of events event firing when window is closed

Events: closeEvent

◆ defaultView

mibVolRenAppController.defaultView

a structure with the default camera position

◆ figPosStored

mibVolRenAppController.figPosStored

a structure with stored positions of the widgets for making snapshots .mibVolRenAppFigure -> position of the main figure .mainGridLayoutRowHeights -> heights of rows in obj.View.handles.mainGridLayout

◆ keyFrameTableIndex

mibVolRenAppController.keyFrameTableIndex

index of the selected key frame

◆ listener

mibVolRenAppController.listener

a cell array with handles to listeners

◆ matlabVersion

mibVolRenAppController.matlabVersion

current version of MATLAB

◆ maxIntValue

mibVolRenAppController.maxIntValue

max integer value of the loaded volume

◆ mibModel

mibVolRenAppController.mibModel

handles to mibModel

Referenced by mibVolRenAppController().

◆ modelTableIndex

mibVolRenAppController.modelTableIndex

index of the selected material in the modelTable

◆ noOverlayMaterials

mibVolRenAppController.noOverlayMaterials

number of materials shown in the overlay

◆ overlayAlpha

mibVolRenAppController.overlayAlpha

a vector with alpha values for overlay materials

◆ overlayShownMaterials

mibVolRenAppController.overlayShownMaterials

a vector of shown (true) or hidden (false) materials in the model overlay

◆ scalingTransform

mibVolRenAppController.scalingTransform

tform to scale the dataset upon loading to have its units in um

◆ Settings

mibVolRenAppController.Settings

a structure with settings, initialized from obj.mibModel.preferences.VolRen; .volumeAlphaCurve.x = [0 .3 .7 1]; .volumeAlphaCurve.y = [1 1 0 0]; .markerSize - marker size for the alpha plot .BackgroundColor - color for the background .colormapName - a string with default colormap, or custom (not yet implemented) .colormapInvert - true/false, invert or not the colormap .animationPath - a structure with animation path .noFramesPreview - number of frames for the preview

◆ surfaceTableIndex

mibVolRenAppController.surfaceTableIndex

index of the selected row in the surfaceTable

◆ surfList

mibVolRenAppController.surfList

a cell array of generated surfaces

◆ surfListAlpha

mibVolRenAppController.surfListAlpha

an array of alpha values for the generated surfaces

◆ View

mibVolRenAppController.View

handle to the view / mibVolRenAppGUI

◆ viewer

mibVolRenAppController.viewer

handle to the main viewer widget

◆ volume

mibVolRenAppController.volume

main image volume

◆ volumeAlphaCurve

mibVolRenAppController.volumeAlphaCurve

a structure with alpha curve details .x - vector of intensity points [0 - 1] .y - value of alpha for each intensity point [0 - 1] .alphamap - calculated alpha map used in volshow .activePoint - selected point

◆ volumeColormap

mibVolRenAppController.volumeColormap

vector with the colormap

◆ volumeScaleFactor

mibVolRenAppController.volumeScaleFactor

scale factor to downsample the datasets, below 1

The documentation for this class was generated from the following file:

Classes/@mibVolRenAppController/mibVolRenAppController.m

Public Member Functions

Static Public Member Functions

Public Attributes

Detailed Description

Constructor & Destructor Documentation

◆ mibVolRenAppController()

Member Function Documentation

◆ addAnimationKeyFrame()

◆ alphaAxesButtonDown()

◆ alphaCurveOperations()

◆ cameraListner_Callback()

◆ changeSlice()

◆ closeWindow()

◆ deleteAllAnimationKeyFrames()

◆ generateColorMap()

◆ generatePositionsForKeyFramesAnimation()

◆ generatePositionsForSpinAnimation()

◆ grabFrame()

◆ grabVolume()

◆ keyFrameTable_CellSelection()

◆ keyFrameTable_cm_Callback()

◆ loadAnimationPath()

◆ makeAnimation()

◆ makeSnapshop()

◆ menuChangeView()

◆ modelHideAllMaterials()

◆ modelTable_CellSelection()

◆ modelTable_cm_Callback()

◆ modelTableCellEdit()

◆ modelUpdateOverlay()

◆ plotAlphaPlot()

◆ prepareWindowForGrabFrame()

◆ previewAnimation()

◆ recalculateAlphamap()

◆ restoreWindowAfterGrabFrame()

◆ saveAnimationPath()

◆ showHelp()

◆ showVolume()

◆ spinDataset()

◆ surfaceTable_CellSelection()

◆ surfaceTable_cm_Callback()

◆ surfaceTableCellEdit()

◆ toggleViewerSettings()

◆ transparentVolume()

◆ updateAnimationNumberOfFrames()

◆ updateBackgroundColor()

◆ updateCameraPosition()

◆ updateCameraWidgets()

◆ updateColormap()

◆ updateIsovalue()

◆ updateKeyFrameTable()

◆ updateModelTable()

◆ updateOverlayRenderingStyle()

◆ updateScalingTransform()

◆ updateSurfaceTable()

◆ updateVolumeRenderingStyle()

◆ updateWidgets()

◆ ViewListner_Callback()

Member Data Documentation

◆ alphaPlotHandle

◆ animationFilename

◆ animationPath

◆ animationPreviewRunning

◆ BatchOpt

◆ childControllers

◆ childControllersIds

◆ closeEvent

◆ defaultView

◆ figPosStored

◆ keyFrameTableIndex

◆ listener

◆ matlabVersion

◆ maxIntValue

◆ mibModel

◆ modelTableIndex

◆ noOverlayMaterials

◆ overlayAlpha

◆ overlayShownMaterials

◆ scalingTransform

◆ Settings