mibWoundHealingAssayController Class Reference

class is a template class for using with GUI developed using appdesigner of Matlab More...

Inheritance diagram for mibWoundHealingAssayController:

Collaboration diagram for mibWoundHealingAssayController:

Public Member Functions
	mibWoundHealingAssayController (mibModel, varargin)
function	closeWindow ()
	closing mibWoundHealingAssayController window
function	updateWidgets ()
	update widgets of this window
function	SelectDirectories ()
function	SelectOutputDirectory ()
function	returnBatchOpt (BatchOptOut)
	return structure with Batch Options and possible configurations via the notify syncBatch event Parameters: BatchOptOut: a local structure with Batch Options generated during Continue callback. It may contain more fields than obj.BatchOpt structure
function	updateOutputPath (value)
	update output path from the editbox
function	Stitch ()
	---------------------------------------------------------------— % Additional functions and callbacks stitch the datasets
function	WoundHealing ()
	perform wound healing assay for the selected directories detection of the wound width is based on code of Constantino Carlos Reyes-Aldasoro https://se.mathworks.com/matlabcentral/fileexchange/67932-cell-migration-in-scratch-wound-assays Reference: C.C. Reyes-Aldasoro, D. Biram, G.M. Tozer, C. Kanthou Measuring cellular migration with image processing Electronics Letters, Volume 44, Issue 13, 19 June 2008, p. 791 – 793 https://digital-library.theiet.org/content/journals/10.1049/el_20080943

Static Public Member Functions
static function	ViewListner_Callback (obj, src, evnt)

Public Attributes
	mibModel
	handles to mibModel
	View
	handle to the view / mibWoundHealingAssayGUI
	listener
	a cell array with handles to listeners
	BatchOpt
	a structure compatible with batch operation name of each field should be displayed in a tooltip of GUI it is recommended that the Tags of widgets match the name of the fields in this structure .Parameter - [editbox], char/string .Checkbox - [checkbox], logical value true or false .Dropdown{1} - [dropdown], cell string for the dropdown .Dropdown{2} - [optional], an array with possible options .Radio - [radiobuttons], cell string Radio1 or Radio2... .ParameterNumeric{1} - [numeric editbox], cell with a number .ParameterNumeric{2} - [optional], vector with limits [min, max] .ParameterNumeric{3} - [optional], string on - to round the value, off to do not round the value
EVENT	closeEvent
	> Description of events event firing when window is closed
Public Attributes inherited from handle
	addlistener
	Creates a listener for the specified event and assigns a callback function to execute when the event occurs.
	notify
	Broadcast a notice that a specific event is occurring on a specified handle object or array of handle objects.
	delete
	Handle object destructor method that is called when the object's lifecycle ends.
	disp
	Handle object disp method which is called by the display method. See the MATLAB disp function.
	display
	Handle object display method called when MATLAB software interprets an expression returning a handle object that is not terminated by a semicolon. See the MATLAB display function.
	findobj
	Finds objects matching the specified conditions from the input array of handle objects.
	findprop
	Returns a meta.property objects associated with the specified property name.
	fields
	Returns a cell array of string containing the names of public properties.
	fieldnames
	Returns a cell array of string containing the names of public properties. See the MATLAB fieldnames function.
	isvalid
	Returns a logical array in which elements are true if the corresponding elements in the input array are valid handles. This method is Sealed so you cannot override it in a handle subclass.
	eq
	Relational functions example. See details for more information.
	transpose
	Transposes the elements of the handle object array.
	permute
	Rearranges the dimensions of the handle object array. See the MATLAB permute function.
	reshape
	hanges the dimensions of the handle object array to the specified dimensions. See the MATLAB reshape function.
	sort
	ort the handle objects in any array in ascending or descending order.

Detailed Description

class is a template class for using with GUI developed using appdesigner of Matlab

obj.startController('mibWoundHealingAssayController'); // as GUI tool

or

// a code below was used for mibImageArithmeticController
BatchOpt.Parameter = 'test';  // fill edit boxes as strings
BatchOpt.Checkbox = true;     // fill checkboxes with logicals: true/false
BatchOpt.Popup = {'value'};        // value for the popups as a cell
BatchOpt.Radio = {'Radio1'};          // selection of radio buttons, as cell with the handle of the target radio button
BatchOpt.showWaitbar = true;  // show or not the waitbar
obj.startController('mibWoundHealingAssayController', [], BatchOpt); // start mibWoundHealingAssayController in the batch mode

or

// trigger return of the possible Options using returnBatchOpt function
// using notify syncBatch event
obj.startController('mibWoundHealingAssayController', [], NaN);

Constructor & Destructor Documentation

mibWoundHealingAssayController()

mibWoundHealingAssayController.mibWoundHealingAssayController	(		mibModel,
			varargin )

References handle.addlistener, mibModel, mibUpdateFontSize(), moveWindowOutside(), handle.notify, updateBatchOptCombineFields_Shared(), and updateGUIFromBatchOpt_Shared().

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Member Function Documentation

closeWindow()

function mibWoundHealingAssayController.closeWindow

(

)

closing mibWoundHealingAssayController window

References handle.isvalid, and handle.notify.

returnBatchOpt()

function mibWoundHealingAssayController.returnBatchOpt

(

BatchOptOut

)

return structure with Batch Options and possible configurations via the notify syncBatch event Parameters: BatchOptOut: a local structure with Batch Options generated during Continue callback. It may contain more fields than obj.BatchOpt structure

References handle.notify.

SelectDirectories()

function mibWoundHealingAssayController.SelectDirectories

(

)

References uigetfile_n_dir().

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SelectOutputDirectory()

function mibWoundHealingAssayController.SelectOutputDirectory

(

)

Stitch()

function mibWoundHealingAssayController.Stitch

(

)

---------------------------------------------------------------— % Additional functions and callbacks stitch the datasets

References mibGetImageMetadata(), mibGetImages(), mibInputMultiDlg(), and handle.notify.

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updateOutputPath()

function mibWoundHealingAssayController.updateOutputPath

(

value

)

update output path from the editbox

updateWidgets()

function mibWoundHealingAssayController.updateWidgets

(

)

update widgets of this window

References updateBatchOptFromGUI_Shared(), and updateGUIFromBatchOpt_Shared().

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ViewListner_Callback()

static function mibWoundHealingAssayController.ViewListner_Callback ( obj, src, evnt )

static

WoundHealing()

function mibWoundHealingAssayController.WoundHealing

(

)

perform wound healing assay for the selected directories detection of the wound width is based on code of Constantino Carlos Reyes-Aldasoro https://se.mathworks.com/matlabcentral/fileexchange/67932-cell-migration-in-scratch-wound-assays Reference: C.C. Reyes-Aldasoro, D. Biram, G.M. Tozer, C. Kanthou Measuring cellular migration with image processing Electronics Letters, Volume 44, Issue 13, 19 June 2008, p. 791 – 793 https://digital-library.theiet.org/content/journals/10.1049/el_20080943

References cellMigration(), max, min, and xlswrite2().

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Member Data Documentation

BatchOpt

mibWoundHealingAssayController.BatchOpt

a structure compatible with batch operation name of each field should be displayed in a tooltip of GUI it is recommended that the Tags of widgets match the name of the fields in this structure .Parameter - [editbox], char/string .Checkbox - [checkbox], logical value true or false .Dropdown{1} - [dropdown], cell string for the dropdown .Dropdown{2} - [optional], an array with possible options .Radio - [radiobuttons], cell string Radio1 or Radio2... .ParameterNumeric{1} - [numeric editbox], cell with a number .ParameterNumeric{2} - [optional], vector with limits [min, max] .ParameterNumeric{3} - [optional], string on - to round the value, off to do not round the value

closeEvent

EVENT mibWoundHealingAssayController.closeEvent

> Description of events event firing when window is closed

Events

closeEvent

listener

mibWoundHealingAssayController.listener

a cell array with handles to listeners

mibModel

mibWoundHealingAssayController.mibModel

handles to mibModel

Referenced by mibWoundHealingAssayController().

View

mibWoundHealingAssayController.View

handle to the view / mibWoundHealingAssayGUI

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The documentation for this class was generated from the following file:

• Classes/@mibWoundHealingAssayController/mibWoundHealingAssayController.m