saveBigDataViewerFormat.m File Reference

Save dataset using the BigDataViewer format of Fiji. More...

Functions
function result =	saveBigDataViewerFormat (filename, I, options)
	Save dataset using the BigDataViewer format of Fiji.

Detailed Description

Save dataset using the BigDataViewer format of Fiji.

Function Documentation

saveBigDataViewerFormat()

function result = saveBigDataViewerFormat	(		filename,
			I,
			options )

Save dataset using the BigDataViewer format of Fiji.

The format description: http://fiji.sc/BigDataViewer#About_the_BigDataViewer_data_format

Parameters

filename	name of the file: xml or h5
I	image dataset, [1:height, 1:width, 1:colors, 1:depth, 1:time]
options	[optional], a structure with extra parameters .ChunkSize - [optional], a matrix that defines chunking layout .Deflate - [optional], a number that defines gzip compression level (0-9). .SubSampling - [optional], a matrix that defines scaling factor for the image pyramid (for example, [1,1,1; 2,2,2; 4,4,4] makes 3 levels) .ResamplingMethod - [optional], a string that defines resampling method .t - time point, when time point > 1, the dataset will be added to the exising .lutColor - [optional], a matrix with definition of color channels [1:colorChannel, R G B], (0-1) .showWaitbar - if 1 - show the wait bar, if 0 - do not show .ImageDescription - [optional], a string with description of the dataset

Return values

result

0 - fail, 1 - success

Required fields of options:

Examples:

result = saveBigDataViewerFormat('mydataset.h5', I, options);  // save dataset 

References min.

Referenced by mibChopDatasetController.chopBtn_Callback(), mibImage.saveImageAsDialog(), mibImage.saveMask(), and mibImage.saveModel().

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