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Public Member Functions | Static Public Member Functions | Public Attributes | List of all members
mibLines3DController Class Reference

a controller class for the table views of lines 3d More...

Inheritance diagram for mibLines3DController:
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Collaboration diagram for mibLines3DController:
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Public Member Functions

 mibLines3DController (mibModel)
 
function  closeWindow ()
 closing mibLines3DController window
 
function  updateWidgets ()
 update widgets and tables
 
function  updateEdgesViewTable (activeTreeIndex, nodeByTree)
 update edge table
 
function activeIndex = updateNodesViewTable (activeTreeIndex, nodeByTree)
 update nodes table
 
function  edgesViewTable_CellEditCallback (eventdata)
 callback for modification of cell in edgeViewTable
 
function  nodesViewTable_CellEditCallback (eventdata)
 callback for modification of cell in nodesViewTable
 
function  settingsBtn_Callback ()
 update settings for Lines3D
 
function  loadBtn_Callback ()
 load annotation from a file or import from Matlab
 
function  saveBtn_Callback (treeIds)
 save annotations to a file or export to Matlab
 
function  deleteBtn_Callback ()
 % function saveAnnotationsToFile(obj, Lines3D) % save Lines3D structure to a file % % Parameters: % Lines3D: a structure with fields % .G graph object, that includes Edges and Nodes fields % .Settings a structure with settings global mibPath; delete all annotations
 
function  nodesViewTable_CellSelectionCallback (Indices, forceJump)
 a callback for cell selection of obj.View.handles.nodesViewTable
 
function  edgesViewTable_CellSelectionCallback (Indices, forceJump)
 a callback for cell selection of obj.View.handles.edgesViewTable
 
function  treesViewTable_CellSelectionCallback (Indices)
 a callback for cell selection of obj.View.handles.treesViewTable
 
function  treesViewTable_CellEditCallback (Indices)
 a callback for cell edit of obj.View.handles.treesViewTable
 
function  treesViewTable_cb (parameter)
 callbacks for the context menu of obj.View.handles.treesViewTable
 
function  edgesViewTable_cb (parameter)
 callbacks for the context menu of obj.View.handles.edgesViewTable
 
function  nodesViewTable_cb (parameter, nodeId)
 callbacks for the context menu of obj.View.handles.nodesViewTable
 
function  visualizeBtn_Callback (treeId)
 callback for press of the Visualize button visualize the graph in 3D using a separate figure
 

Static Public Member Functions

static function  ViewListner_Callback2 (obj, src, evnt)
 

Public Attributes

 mibModel
 handles to the model
 
 View
 handle to the view
 
 listener
 a cell array with handles to listeners
 
 hAx = "[]"
 
 hFig = "[]"
 axes for the 3D visualization figure
 
 hPlot = "[]"
 a handle to 3D visualization figure
 
 imarisOptions
 a handle to a plot on 3D visualization figure a structure with export options for imaris .radii - number with default radius .color - default color [Red Green Blue Alpha] in range from 0 to 1; .name - default name
 
 indicesEdges
 indices of selected node in the in edgesViewTable
 
 indicesNodes
 indices of selected node in the in nodesViewTable
 
 indicesTrees
 indices of selected trees in the in treeViewTable
 
 jScrollEdges
 java handle to the scroll bar of obj.View.handles.edgesViewTable
 
 jScrollNodes
 java handle to the scroll bar of obj.View.handles.nodesViewTable
 
 jScrollTrees
 java handle to the scroll bar of obj.View.handles.treesViewTable
 
 jEdgesTable
 java handle to the obj.View.handles.edgesViewTable
 
 jNodesTable
 java handle to the obj.View.handles.nodesViewTable
 
 jTreeTable
 java handle to the obj.View.handles.treesViewTable
 
EVENT closeEvent
 > Description of events event firing when window is closed
 
- Public Attributes inherited from handle
 addlistener
 Creates a listener for the specified event and assigns a callback function to execute when the event occurs.
 
 notify
 Broadcast a notice that a specific event is occurring on a specified handle object or array of handle objects.
 
 delete
 Handle object destructor method that is called when the object's lifecycle ends.
 
 disp
 Handle object disp method which is called by the display method. See the MATLAB disp function.
 
 display
 Handle object display method called when MATLAB software interprets an expression returning a handle object that is not terminated by a semicolon. See the MATLAB display function.
 
 findobj
 Finds objects matching the specified conditions from the input array of handle objects.
 
 findprop
 Returns a meta.property objects associated with the specified property name.
 
 fields
 Returns a cell array of string containing the names of public properties.
 
 fieldnames
 Returns a cell array of string containing the names of public properties. See the MATLAB fieldnames function.
 
 isvalid
 Returns a logical array in which elements are true if the corresponding elements in the input array are valid handles. This method is Sealed so you cannot override it in a handle subclass.
 
 eq
 Relational functions example. See details for more information.
 
 transpose
 Transposes the elements of the handle object array.
 
 permute
 Rearranges the dimensions of the handle object array. See the MATLAB permute function.
 
 reshape
 hanges the dimensions of the handle object array to the specified dimensions. See the MATLAB reshape function.
 
 sort
 ort the handle objects in any array in ascending or descending order.
 

Detailed Description

a controller class for the table views of lines 3d

Constructor & Destructor Documentation

◆ mibLines3DController()

mibLines3DController.mibLines3DController ( mibModel)

References handle.addlistener, findjobj(), and mibModel.

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Member Function Documentation

◆ closeWindow()

function mibLines3DController.closeWindow ( )

closing mibLines3DController window

References handle.isvalid, and handle.notify.

◆ deleteBtn_Callback()

function mibLines3DController.deleteBtn_Callback ( )

% function saveAnnotationsToFile(obj, Lines3D) % save Lines3D structure to a file % % Parameters: % Lines3D: a structure with fields % .G graph object, that includes Edges and Nodes fields % .Settings a structure with settings global mibPath; delete all annotations 

         if isempty(obj.mibModel.I{obj.mibModel.Id}.hLines3D.filename)
             fn_out = obj.mibModel.I{obj.mibModel.Id}.meta(<tt>Filename</tt>);
             [path, fn_out, ext] = fileparts(fn_out);
             if isempty(path); path = obj.mibModel.myPath; end
             if isempty(fn_out)
                 fn_out = obj.mibModel.myPath;
             else
                 fn_out = sprintf(<tt>Lines_%s</tt>, fn_out);
                 fn_out = fullfile(path, fn_out);
             end
         else
             fn_out = obj.mibModel.I{obj.mibModel.Id}.hLines3D.filename;
         end

         Filters = {<tt>*.lines3d</tt>,  <tt>Matlab format (*.lines3d)</tt>;...
             <tt>*.am</tt>,   <tt>Amira Spatial Graph ASCII (*.am)</tt>;...
             <tt>*.am</tt>,   <tt>Amira Spatial Graph BINARY (*.am)</tt>;...
             <tt>*.xls</tt>,   <tt>Excel format (*.xls)</tt>; };

         [filename, path, FilterIndex] = uiputfile(Filters, <tt>Save Lines3D...</tt>, fn_out); %...
         if isequal(filename,0); return; end % check for cancel

         fn_out = fullfile(path, filename);

         switch Filters{FilterIndex, 2}
             case <tt>Matlab format (*.lines3d)</tt>
                 saveOptions.format = <tt>lines3d</tt>;
             case {<tt>Amira Spatial Graph ASCII (*.am)</tt>, <tt>Amira Spatial Graph BINARY (*.am)</tt>}
                 if strcmp(Filters{FilterIndex, 2}, <tt>Amira Spatial Graph ASCII (*.am)</tt>)
                     saveOptions.format = <tt>amira-ascii</tt>;
                 else
                     saveOptions.format = <tt>amira-binary</tt>;
                 end

                 extraNodeFields = obj.mibModel.I{obj.mibModel.Id}.hLines3D.extraNodeFields;
                 if ~isempty(extraNodeFields)
                     extraNodeFieldsNumeric = obj.mibModel.I{obj.mibModel.Id}.hLines3D.extraNodeFieldsNumeric;
                     extraNodeFields = extraNodeFields(extraNodeFieldsNumeric>0);
                 end
                 extraEdgeFields = obj.mibModel.I{obj.mibModel.Id}.hLines3D.extraEdgeFields;
                 if ~isempty(extraEdgeFields)
                     extraEdgeFieldsNumeric = obj.mibModel.I{obj.mibModel.Id}.hLines3D.extraEdgeFieldsNumeric;
                     extraEdgeFields = extraEdgeFields(extraEdgeFieldsNumeric>0);
                 end

                 if ~isempty(extraEdgeFields) || ~isempty(extraNodeFields)

% add default fields extraEdgeFields = [{Length; Weight}; extraEdgeFields]; extraNodeFields = [{Radius}; extraNodeFields];

selectedNode = obj.View.handles.nodesViewAdditionalField.String(obj.View.handles.nodesViewAdditionalField.Value); if numel(extraNodeFields) < 2 prompts = {Field for nodes:; Field for edges:}; defAns = {[extraNodeFields; find(ismember(extraNodeFields, selectedNode))]; extraEdgeFields}; else nodeId2 = find(~ismember(extraNodeFields, selectedNode)); prompts = {First field for nodes:; Second field for nodes:; Field for edges:}; defAns = {[extraNodeFields; find(ismember(extraNodeFields, selectedNode))]; ... [extraNodeFields; nodeId2(1)]; ... extraEdgeFields}; end

dlgTitle = Export to Amira; options.WindowStyle = normal; % [optional] style of the window options.PromptLines = [1, 1]; % [optional] number of lines for widget titles options.Title = sprintf(Select fields to export
(only numerical fields can be exported)); options.TitleLines = 2; options.Focus = 1; % [optional] define index of the widget to get focus [answer, selIndex] = mibInputMultiDlg({mibPath}, prompts, defAns, dlgTitle, options); if isempty(answer); return; end if numel(extraNodeFields) < 2 outputFieldNode = extraNodeFields(selIndex(1)); outputFieldEdge = extraEdgeFields(selIndex(2)); else outputFieldNode = [extraNodeFields(selIndex(1)); extraNodeFields(selIndex(2))]; outputFieldEdge = extraEdgeFields(selIndex(3)); end else outputFieldNode = {Radius}; outputFieldEdge = {Weight}; end saveOptions.NodeFieldName = outputFieldNode; saveOptions.EdgeFieldName = outputFieldEdge; case Excel format (*.xls) saveOptions.format = excel; end

obj.mibModel.I{obj.mibModel.Id}.hLines3D.saveToFile(fn_out, saveOptions); fprintf(Saving Lines3D to s: done!
, fn_out); return;

if strcmp(Matlab format (*.lines3d), Filters{FilterIndex, 2}) % matlab format save(fn_out, Lines3D, -mat, -v7.3); obj.mibModel.I{obj.mibModel.Id}.hLines3D.filename = fn_out; elseif strcmp(Excel format (*.xls), Filters{FilterIndex, 2}) % excel format wb = waitbar(0,Please wait...,Name,Generating Excel file...,WindowStyle,modal); warning off MATLAB:xlswrite:AddSheet

% Sheet 1 s = {sprintf(Lines3D for s, obj.mibModel.I{obj.mibModel.Id}.meta(Filename));}; s(2,1) = {sprintf(Lines3D filename: s, obj.mibModel.I{obj.mibModel.Id}.hLines3D.filename)}; s(4,1) = {NODES};

Variables = obj.mibModel.I{obj.mibModel.Id}.hLines3D.G.Nodes.Properties.VariableNames; s(6,2) = {NodeId}; s(6,3) = {TreeName}; s(6,4) = {NodeName}; s(6,5) = {X}; s(6,6) = {Y}; s(6,7) = {Z}; Variables(ismember(Variables, {PointsXYZ, TreeName, NodeName})) = []; s(6,8:8+numel(Variables)-1) = Variables;
Units = obj.mibModel.I{obj.mibModel.Id}.hLines3D.G.Nodes.Properties.VariableUnits; if ~isempty(Units) % s(7,2:2+numel(Variables)-1) = Units; end

% sheet 2 s2 = {sprintf(Lines3D for s, obj.mibModel.I{obj.mibModel.Id}.meta(Filename));}; s2(2,1) = {sprintf(Lines3D filename: s, obj.mibModel.I{obj.mibModel.Id}.hLines3D.filename)}; s2(4,1) = {EDGES};

Variables = obj.mibModel.I{obj.mibModel.Id}.hLines3D.G.Edges.Properties.VariableNames; s2(6,2) = {EndNode1}; s2(6,3) = {EndNode2}; s2(6,4) = {EndNode1Name}; s2(6,5) = {EndNode2Name}; s2(6,6) = {Weight}; s2(6,7) = {Length}; Variables(ismember(Variables, {EndNodes, Weight, Length, Edges})) = []; s2(6,8:8+numel(Variables)-1) = Variables; % Units = obj.mibModel.I{obj.mibModel.Id}.hLines3D.G.Edges.Properties.VariableUnits; % if ~isempty(Units) % s2(7,2:2+numel(Variables)-1) = Units; % end 

             dy1 = 8;
             dy2 = 8;
             waitbar(.1, wb);

             nodesCount = 0;
             for treeId = 1:obj.mibModel.I{obj.mibModel.Id}.hLines3D.noTrees
                 [curTree, nodeIds, EdgesTable, NodesTable] = obj.mibModel.I{obj.mibModel.Id}.hLines3D.getTree(treeId);

TreeName = curTree.Nodes.TreeName(1,:); TreeName = NodesTable.TreeName(1,:); NodeNames = NodesTable.NodeName; % store node names for generation of edges s(dy1, 1) = TreeName; [noRows, ~] = size(NodesTable); s(dy1:dy1+noRows-1, 2) = num2cell(nodeIds); s(dy1:dy1+noRows-1, 3) = NodesTable.TreeName; s(dy1:dy1+noRows-1, 4) = NodesTable.NodeName; s(dy1:dy1+noRows-1, 5:7) = [num2cell(NodesTable.PointsXYZ(:,1)), num2cell(NodesTable.PointsXYZ(:,2)), num2cell(NodesTable.PointsXYZ(:,3))]; NodesTable.TreeName = []; NodesTable.NodeName = []; NodesTable.PointsXYZ = []; [~, noCols] = size(NodesTable); s(dy1:dy1+noRows-1, 8:8+noCols-1) = table2cell(NodesTable); dy1 = dy1 + noRows;

s2(dy2, 1) = TreeName; [noRows, ~] = size(EdgesTable); s2(dy2:dy2+noRows-1, 2) = num2cell(EdgesTable.EndNodes(:,1)); s2(dy2:dy2+noRows-1, 3) = num2cell(EdgesTable.EndNodes(:,2)); s2(dy2:dy2+noRows-1, 4) = NodeNames(EdgesTable.EndNodes(:,1)-nodesCount); s2(dy2:dy2+noRows-1, 5) = NodeNames(EdgesTable.EndNodes(:,2)-nodesCount); s2(dy2:dy2+noRows-1, 6) = num2cell(EdgesTable.Weight); s2(dy2:dy2+noRows-1, 7) = num2cell(EdgesTable.Length); EdgesTable.EndNodes = []; EdgesTable.Weight = []; EdgesTable.Length = []; EdgesTable.Edges = []; % do not save Edges [~, noCols] = size(EdgesTable); s2(dy2:dy2+noRows-1, 8:8+noCols-1) = table2cell(EdgesTable); dy2 = dy2 + noRows; nodesCount = nodesCount + size(NodesTable,1); end

waitbar(.2, wb); xlswrite2(fn_out, s, Nodes, A1); waitbar(.7, wb); xlswrite2(fn_out, s2, Edges, A1);

waitbar(1, wb); delete(wb); else % Spatial graph for Amira if strcmp(Filters{FilterIndex+numel(Filters)/2}, Amira Spatial Graph ASCII (*.am)) options.format = ascii; else options.format = binary; end options.overwrite = 1;

extraNodeFields = obj.mibModel.I{obj.mibModel.Id}.hLines3D.extraNodeFields; if ~isempty(extraNodeFields) extraNodeFieldsNumeric = obj.mibModel.I{obj.mibModel.Id}.hLines3D.extraNodeFieldsNumeric; extraNodeFields = extraNodeFields(extraNodeFieldsNumeric>0); end extraEdgeFields = obj.mibModel.I{obj.mibModel.Id}.hLines3D.extraEdgeFields; if ~isempty(extraEdgeFields) extraEdgeFieldsNumeric = obj.mibModel.I{obj.mibModel.Id}.hLines3D.extraEdgeFieldsNumeric; extraEdgeFields = extraEdgeFields(extraEdgeFieldsNumeric>0); end

if ~isempty(extraEdgeFields) || ~isempty(extraNodeFields) % add default fields extraEdgeFields = [{Length; Weight}; extraEdgeFields]; extraNodeFields = [{Radius}; extraNodeFields];

selectedNode = obj.View.handles.nodesViewAdditionalField.String(obj.View.handles.nodesViewAdditionalField.Value); if numel(extraNodeFields) < 2 prompts = {Field for nodes:; Field for edges:}; defAns = {[extraNodeFields; find(ismember(extraNodeFields, selectedNode))]; extraEdgeFields}; else nodeId2 = find(~ismember(extraNodeFields, selectedNode)); prompts = {First field for nodes:; Second field for nodes:; Field for edges:}; defAns = {[extraNodeFields; find(ismember(extraNodeFields, selectedNode))]; ... [extraNodeFields; nodeId2(1)]; ...
extraEdgeFields}; end dlgTitle = Export to Amira; options.WindowStyle = normal; % [optional] style of the window options.PromptLines = [1, 1]; % [optional] number of lines for widget titles options.Title = sprintf(Select fields to export
(only numerical fields can be exported)); options.TitleLines = 2; options.Focus = 1; % [optional] define index of the widget to get focus [answer, selIndex] = mibInputMultiDlg({mibPath}, prompts, defAns, dlgTitle, options); if isempty(answer); return; end if numel(extraNodeFields) < 2 outputFieldNode = extraNodeFields(selIndex(1)); outputFieldEdge = extraEdgeFields(selIndex(2)); else outputFieldNode = [extraNodeFields(selIndex(1)); extraNodeFields(selIndex(2))]; outputFieldEdge = extraEdgeFields(selIndex(3)); end else outputFieldNode = {Radius}; outputFieldEdge = {Weight}; end options.NodeFieldName = outputFieldNode; options.EdgeFieldName = outputFieldEdge;

Lines3D.G.Nodes.XData = Lines3D.G.Nodes.PointsXYZ(:,1); Lines3D.G.Nodes.YData = Lines3D.G.Nodes.PointsXYZ(:,2); Lines3D.G.Nodes.ZData = Lines3D.G.Nodes.PointsXYZ(:,3); Lines3D.G.Nodes = removevars(Lines3D.G.Nodes, PointsXYZ); % remove PointsXYZ Lines3D.G.Nodes.(outputFieldNode) = Lines3D.G.Nodes.(outputFieldNode); % remove PointsXYZ Lines3D.G.Nodes = removevars(Lines3D.G.Nodes, outputFieldNode); % remove PointsXYZ

% generate points for edge segments % require to have two points (starting and ending) for each % edge Lines3D.G.Edges.Points = repmat({zeros([2 6])}, [size(Lines3D.G.Edges,1) 1]); storeEdgeValues = Lines3D.G.Edges.(outputFieldEdge{1}); Lines3D.G.Edges.(outputFieldEdge{1}) = zeros([size(Lines3D.G.Edges,1) 1]); for edgeId = 1:size(Lines3D.G.Edges,1) id1 = Lines3D.G.Edges.EndNodes(edgeId,1); id2 = Lines3D.G.Edges.EndNodes(edgeId,2); Lines3D.G.Edges.Points{edgeId, :} = ... [Lines3D.G.Nodes.XData([id1 id2]), Lines3D.G.Nodes.YData([id1 id2]), Lines3D.G.Nodes.ZData([id1 id2])]; Lines3D.G.Edges.(outputFieldEdge{1})(edgeId) = storeEdgeValues(edgeId); end graph2amiraSpatialGraph(fn_out, Lines3D.G, options); end fprintf(Saving Lines3D to s: done!
, fn_out);

end

References handle.notify.

◆ edgesViewTable_cb()

function mibLines3DController.edgesViewTable_cb ( parameter)

callbacks for the context menu of obj.View.handles.edgesViewTable

Parameters
parametera string with selected option

◆ edgesViewTable_CellEditCallback()

function mibLines3DController.edgesViewTable_CellEditCallback ( eventdata)

callback for modification of cell in edgeViewTable

Paramters
eventdata: a structure with fields .Indices - row and column indices of the cell(s) edited .PreviousData - previous data for the cell(s) edited .EditData - string(s) entered by the user .NewData - EditData or its converted form set on the Data property. Empty if Data was not changed .Error - error string when failed to convert EditData to appropriate value for Data
Required fields of eventdata:

◆ edgesViewTable_CellSelectionCallback()

function mibLines3DController.edgesViewTable_CellSelectionCallback ( Indices,
forceJump )

a callback for cell selection of obj.View.handles.edgesViewTable

Parameters
Indicesindex of the selected cell, returned by eventdata.Indices structure of GUI
forceJumpswitch 1 - jump to node, 0 - do as obj.View.handles.jumpCheck.Value indicates

◆ loadBtn_Callback()

function mibLines3DController.loadBtn_Callback ( )

load annotation from a file or import from Matlab

References Lines3D.activeNodeId, handle.disp, handle.fieldnames, Lines3D.filename, Lines3D.G, mib_uigetfile(), mibInputMultiDlg(), and handle.notify.

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◆ nodesViewTable_cb()

function mibLines3DController.nodesViewTable_cb ( parameter,
nodeId )

callbacks for the context menu of obj.View.handles.nodesViewTable

Parameters
parametera string with selected option
nodeId[optional], index of the node to jump or modify

References mibInputDlg(), and handle.notify.

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◆ nodesViewTable_CellEditCallback()

function mibLines3DController.nodesViewTable_CellEditCallback ( eventdata)

callback for modification of cell in nodesViewTable

Paramters
eventdata: a structure with fields .Indices - row and column indices of the cell(s) edited .PreviousData - previous data for the cell(s) edited .EditData - string(s) entered by the user .NewData - EditData or its converted form set on the Data property. Empty if Data was not changed .Error - error string when failed to convert EditData to appropriate value for Data
Required fields of eventdata:

References handle.notify.

◆ nodesViewTable_CellSelectionCallback()

function mibLines3DController.nodesViewTable_CellSelectionCallback ( Indices,
forceJump )

a callback for cell selection of obj.View.handles.nodesViewTable

Parameters
Indicesindex of the selected cell, returned by eventdata.Indices structure of GUI
forceJumpswitch 1 - jump to node, 0 - do as obj.View.handles.jumpCheck.Value indicates

◆ saveBtn_Callback()

function mibLines3DController.saveBtn_Callback ( treeIds)

save annotations to a file or export to Matlab

References Lines3D.activeNodeId, Lines3D.G, Lines3D.getOptions(), mibInputDlg(), and mibInputMultiDlg().

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◆ settingsBtn_Callback()

function mibLines3DController.settingsBtn_Callback ( )

update settings for Lines3D

References mibInputMultiDlg(), and handle.notify.

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◆ treesViewTable_cb()

function mibLines3DController.treesViewTable_cb ( parameter)

callbacks for the context menu of obj.View.handles.treesViewTable

Parameters
parametera string with selected option

References mibInputDlg(), and handle.notify.

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◆ treesViewTable_CellEditCallback()

function mibLines3DController.treesViewTable_CellEditCallback ( Indices)

a callback for cell edit of obj.View.handles.treesViewTable

Parameters
Indicesindex of the selected cell, returned by eventdata.Indices structure of GUI

References handle.notify.

◆ treesViewTable_CellSelectionCallback()

function mibLines3DController.treesViewTable_CellSelectionCallback ( Indices)

a callback for cell selection of obj.View.handles.treesViewTable

Parameters
Indicesindex of the selected cell, returned by eventdata.Indices structure of GUI

References max, and min.

◆ updateEdgesViewTable()

function mibLines3DController.updateEdgesViewTable ( activeTreeIndex,
nodeByTree )

update edge table

Parameters
activeTreeIndexindex of active tree
nodeByTree[optional], vector of indices, nodes belonging to the tree

References min.

◆ updateNodesViewTable()

function activeIndex = mibLines3DController.updateNodesViewTable ( activeTreeIndex,
nodeByTree )

update nodes table

Parameters
activeTreeIndexindex of active tree
nodeByTree[optional], vector of indices, nodes belonging to the tree
Return values
activeIndexindex of tha active node

References min.

◆ updateWidgets()

function mibLines3DController.updateWidgets ( )

update widgets and tables

References N.

◆ ViewListner_Callback2()

static function mibLines3DController.ViewListner_Callback2 ( obj,
src,
evnt )
static

◆ visualizeBtn_Callback()

function mibLines3DController.visualizeBtn_Callback ( treeId)

callback for press of the Visualize button visualize the graph in 3D using a separate figure

Parameters
treeId[optional] index of tree to visualize

References handle.disp, handle.isvalid, max, and mibInputMultiDlg().

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Member Data Documentation

◆ closeEvent

EVENT mibLines3DController.closeEvent

> Description of events event firing when window is closed

Events
closeEvent

◆ hAx

mibLines3DController.hAx = "[]"

◆ hFig

mibLines3DController.hFig = "[]"

axes for the 3D visualization figure


Default: "[]"

◆ hPlot

mibLines3DController.hPlot = "[]"

a handle to 3D visualization figure


Default: "[]"

◆ imarisOptions

mibLines3DController.imarisOptions

a handle to a plot on 3D visualization figure a structure with export options for imaris .radii - number with default radius .color - default color [Red Green Blue Alpha] in range from 0 to 1; .name - default name

◆ indicesEdges

mibLines3DController.indicesEdges

indices of selected node in the in edgesViewTable

◆ indicesNodes

mibLines3DController.indicesNodes

indices of selected node in the in nodesViewTable

◆ indicesTrees

mibLines3DController.indicesTrees

indices of selected trees in the in treeViewTable

◆ jEdgesTable

mibLines3DController.jEdgesTable

java handle to the obj.View.handles.edgesViewTable

◆ jNodesTable

mibLines3DController.jNodesTable

java handle to the obj.View.handles.nodesViewTable

◆ jScrollEdges

mibLines3DController.jScrollEdges

java handle to the scroll bar of obj.View.handles.edgesViewTable

◆ jScrollNodes

mibLines3DController.jScrollNodes

java handle to the scroll bar of obj.View.handles.nodesViewTable

◆ jScrollTrees

mibLines3DController.jScrollTrees

java handle to the scroll bar of obj.View.handles.treesViewTable

◆ jTreeTable

mibLines3DController.jTreeTable

java handle to the obj.View.handles.treesViewTable

◆ listener

mibLines3DController.listener

a cell array with handles to listeners

◆ mibModel

mibLines3DController.mibModel

handles to the model

Referenced by mibLines3DController().

◆ View

mibLines3DController.View

handle to the view

The documentation for this class was generated from the following file: