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ib_MembraneDetection.m File Reference

ib_MembraneDetection function uses random forest classifier for segmentation. The function utilize Random Forest for Membrane Detection functions by Verena Kaynig see more http://www.kaynig.de/demos.html More...

Functions

function
varargout = 
ib_MembraneDetection (varargin)
 ib_MembraneDetection function uses random forest classifier for segmentation. The function utilize Random Forest for Membrane Detection functions by Verena Kaynig see more http://www.kaynig.de/demos.html More...
 
function  ibMembraneDetection>ib_MembraneDetection_OpeningFcn (hObject, eventdata, handles, varargin)
 
function
varargout = 
ibMembraneDetection>ib_MembraneDetection_OutputFcn (hObject, eventdata, handles)
 
function  ibMembraneDetection>ib_MembraneDetection_CloseRequestFcn (hObject, eventdata, handles)
 
function  ibMembraneDetection>tempDirEdit_Callback (hObject, eventdata, handles)
 
function  ibMembraneDetection>tempDirSelectBtn_Callback (hObject, eventdata, handles)
 
function  ibMembraneDetection>classifierFilenameBtn_Callback (hObject, eventdata, handles)
 
function  ibMembraneDetection>updateLoglist (addText, handles)
 
function  ibMembraneDetection>wipeTempDirBtn_Callback (hObject, eventdata, handles)
 
function  ibMembraneDetection>trainClassifierBtn_Callback (hObject, eventdata, handles)
 
function  ibMembraneDetection>predictSlice_Callback (hObject, eventdata, handles)
 
function  ibMembraneDetection>saveClassifierBtn_Callback (hObject, eventdata, handles)
 
function  ibMembraneDetection>trainClassifierToggle_Callback (hObject, eventdata, handles)
 
function  ibMembraneDetection>trainClassifier (handles)
 
function  ibMembraneDetection>predictDataset (handles, sliceNumber)
 
function  ibMembraneDetection>helpBtn_Callback (hObject, eventdata, handles)
 
function  ibMembraneDetection>classifierFilenameEdit_Callback (hObject, eventdata, handles)
 

Detailed Description

ib_MembraneDetection function uses random forest classifier for segmentation. The function utilize Random Forest for Membrane Detection functions by Verena Kaynig see more http://www.kaynig.de/demos.html

Function Documentation

function varargout = ib_MembraneDetection (   varargin)

ib_MembraneDetection function uses random forest classifier for segmentation. The function utilize Random Forest for Membrane Detection functions by Verena Kaynig see more http://www.kaynig.de/demos.html

ib_MembraneDetection contains MATLAB code for ib_MembraneDetection.fig

Referenced by imbrowser>menuToolsClassifiersMembrane_Callback().

Here is the caller graph for this function:

function ibMembraneDetection>classifierFilenameBtn_Callback (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>classifierFilenameEdit_Callback (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>helpBtn_Callback (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>ib_MembraneDetection_CloseRequestFcn (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>ib_MembraneDetection_OpeningFcn (   hObject,
  eventdata,
  handles,
  varargin 
)

References ib_updateFontSize(), and mib_rescaleWidgets().

Here is the call graph for this function:

function varargout = ibMembraneDetection>ib_MembraneDetection_OutputFcn (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>predictDataset (   handles,
  sliceNumber 
)

References classRF_predict(), ib_do_backup(), membraneFeatures(), and skeletonize().

Here is the call graph for this function:

function ibMembraneDetection>predictSlice_Callback (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>saveClassifierBtn_Callback (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>tempDirEdit_Callback (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>tempDirSelectBtn_Callback (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>trainClassifier (   handles)

References classRF_predict(), classRF_train(), ib_do_backup(), membraneFeatures(), and skeletonize().

Here is the call graph for this function:

function ibMembraneDetection>trainClassifierBtn_Callback (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>trainClassifierToggle_Callback (   hObject,
  eventdata,
  handles 
)
function ibMembraneDetection>updateLoglist (   addText,
  handles 
)
function ibMembraneDetection>wipeTempDirBtn_Callback (   hObject,
  eventdata,
  handles 
)