ib_MembraneDetection.m File Reference

ib_MembraneDetection function uses random forest classifier for segmentation. The function utilize Random Forest for Membrane Detection functions by Verena Kaynig see more http://www.kaynig.de/demos.html More...

Functions
function varargout =	ib_MembraneDetection (varargin)
	ib_MembraneDetection function uses random forest classifier for segmentation. The function utilize Random Forest for Membrane Detection functions by Verena Kaynig see more http://www.kaynig.de/demos.html More...
function	ibMembraneDetection>ib_MembraneDetection_OpeningFcn (hObject, eventdata, handles, varargin)
function varargout =	ibMembraneDetection>ib_MembraneDetection_OutputFcn (hObject, eventdata, handles)
function	ibMembraneDetection>ib_MembraneDetection_CloseRequestFcn (hObject, eventdata, handles)
function	ibMembraneDetection>tempDirEdit_Callback (hObject, eventdata, handles)
function	ibMembraneDetection>tempDirSelectBtn_Callback (hObject, eventdata, handles)
function	ibMembraneDetection>classifierFilenameBtn_Callback (hObject, eventdata, handles)
function	ibMembraneDetection>updateLoglist (addText, handles)
function	ibMembraneDetection>wipeTempDirBtn_Callback (hObject, eventdata, handles)
function	ibMembraneDetection>trainClassifierBtn_Callback (hObject, eventdata, handles)
function	ibMembraneDetection>predictSlice_Callback (hObject, eventdata, handles)
function	ibMembraneDetection>saveClassifierBtn_Callback (hObject, eventdata, handles)
function	ibMembraneDetection>trainClassifierToggle_Callback (hObject, eventdata, handles)
function	ibMembraneDetection>trainClassifier (handles)
function	ibMembraneDetection>predictDataset (handles, sliceNumber)
function	ibMembraneDetection>helpBtn_Callback (hObject, eventdata, handles)
function	ibMembraneDetection>classifierFilenameEdit_Callback (hObject, eventdata, handles)

Detailed Description

ib_MembraneDetection function uses random forest classifier for segmentation. The function utilize Random Forest for Membrane Detection functions by Verena Kaynig see more http://www.kaynig.de/demos.html

Function Documentation

function varargout = ib_MembraneDetection

(

varargin

)

ib_MembraneDetection function uses random forest classifier for segmentation. The function utilize Random Forest for Membrane Detection functions by Verena Kaynig see more http://www.kaynig.de/demos.html

ib_MembraneDetection contains MATLAB code for ib_MembraneDetection.fig

Referenced by imbrowser>menuToolsClassifiersMembrane_Callback().

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function ibMembraneDetection>classifierFilenameBtn_Callback	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>classifierFilenameEdit_Callback	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>helpBtn_Callback	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>ib_MembraneDetection_CloseRequestFcn	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>ib_MembraneDetection_OpeningFcn	(		hObject,
			eventdata,
			handles,
			varargin
	)

References ib_updateFontSize(), and mib_rescaleWidgets().

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function varargout = ibMembraneDetection>ib_MembraneDetection_OutputFcn	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>predictDataset	(		handles,
			sliceNumber
	)

References classRF_predict(), ib_do_backup(), membraneFeatures(), and skeletonize().

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function ibMembraneDetection>predictSlice_Callback	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>saveClassifierBtn_Callback	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>tempDirEdit_Callback	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>tempDirSelectBtn_Callback	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>trainClassifier

(

handles

)

References classRF_predict(), classRF_train(), ib_do_backup(), membraneFeatures(), and skeletonize().

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function ibMembraneDetection>trainClassifierBtn_Callback	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>trainClassifierToggle_Callback	(		hObject,
			eventdata,
			handles
	)

function ibMembraneDetection>updateLoglist	(		addText,
			handles
	)

function ibMembraneDetection>wipeTempDirBtn_Callback	(		hObject,
			eventdata,
			handles
	)