mibAnnotationsController Class Reference

a controller class for the list of annotations available via MIB->Menu->Models->Annotations->List of annotations More...

Inheritance diagram for mibAnnotationsController:

Collaboration diagram for mibAnnotationsController:

Public Member Functions
	mibAnnotationsController (mibModel)
function	closeWindow ()
	closing mibAnnotationsController window
function	updateWidgets ()
	update annotation table
function	loadBtn_Callback ()
	load annotation from a file or import from Matlab
function	saveBtn_Callback ()
	save annotations to a file or export to Matlab
function	saveAnnotationsToFile (labelText, labelPosition, labelValue)
	save annotations to a file
function	deleteBtn_Callback ()
	delete all annotations
function	annotationTable_CellSelectionCallback (Indices)
	a callback for cell selection of obj.View.handles.annotationTable
function	annotationTable_CellEditCallback (Indices)
	a callback for cell edit of obj.View.handles.annotationTable
function	precisionEdit_Callback ()
	callback for modification of the precision parameter for the annotation values
function	tableContextMenu_cb (parameter)
	callbacks for the context menu of obj.View.handles.annotationTable
function	mibAnnotationsGUI_KeyPressFcn (eventdata)
	callback from key presses within the mibAnnotationsGUI
function	annotationTable_KeyPressFcn (eventdata)
	callback from key pressed within the obj.View.handles.annotationTable
function	resortTablePopup_Callback ()
	Resort the list of annotation labels.
function	startController (controllerName, varargin)
	start a child controller using provided name, see more in see more in mibController.startController
function id =	findChildId (childName)
	find id of a child controller, see more in mibController.findChildId
function	settingsBtn_Callback ()
	define additional settings for the annotations

Static Public Member Functions
static function	ViewListner_Callback2 (obj, src, evnt)
static function	purgeControllers (obj, src, evnt)
	find index of the child controller and purge it

Public Attributes
	mibModel
	handles to the model
	View
	handle to the view
	listener
	a cell array with handles to listeners
	imarisOptions
	a structure with export options for imaris .radii - number with default radius .color - default color [Red Green Blue Alpha] in range from 0 to 1; .name - default name
	indices
	indices of selected annotations in the table
	jScroll
	java handle to the scroll bar of obj.View.handles.annotationTable
	jTable
	java handle to the obj.View.handles.annotationTable
	batchModifyExpressionOperation
	operation
	batchModifyExpressionFactor
	factor to modify value
	childControllers
	list of opened subcontrollers
	childControllersIds
	a cell array with names of initialized child controllers
	BatchOpt
	BatchOpt structure.
EVENT	closeEvent
	> Description of events event firing when window is closed
Public Attributes inherited from handle
	addlistener
	Creates a listener for the specified event and assigns a callback function to execute when the event occurs.
	notify
	Broadcast a notice that a specific event is occurring on a specified handle object or array of handle objects.
	delete
	Handle object destructor method that is called when the object's lifecycle ends.
	disp
	Handle object disp method which is called by the display method. See the MATLAB disp function.
	display
	Handle object display method called when MATLAB software interprets an expression returning a handle object that is not terminated by a semicolon. See the MATLAB display function.
	findobj
	Finds objects matching the specified conditions from the input array of handle objects.
	findprop
	Returns a meta.property objects associated with the specified property name.
	fields
	Returns a cell array of string containing the names of public properties.
	fieldnames
	Returns a cell array of string containing the names of public properties. See the MATLAB fieldnames function.
	isvalid
	Returns a logical array in which elements are true if the corresponding elements in the input array are valid handles. This method is Sealed so you cannot override it in a handle subclass.
	eq
	Relational functions example. See details for more information.
	transpose
	Transposes the elements of the handle object array.
	permute
	Rearranges the dimensions of the handle object array. See the MATLAB permute function.
	reshape
	hanges the dimensions of the handle object array to the specified dimensions. See the MATLAB reshape function.
	sort
	ort the handle objects in any array in ascending or descending order.

Detailed Description

a controller class for the list of annotations available via MIB->Menu->Models->Annotations->List of annotations

Constructor & Destructor Documentation

mibAnnotationsController()

mibAnnotationsController.mibAnnotationsController

(

mibModel

)

References handle.addlistener, findjobj(), and mibModel.

Referenced by startController().

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Member Function Documentation

annotationTable_CellEditCallback()

function mibAnnotationsController.annotationTable_CellEditCallback

(

Indices

)

a callback for cell edit of obj.View.handles.annotationTable

Parameters

Indices

index of the selected cell, returned by eventdata.Indices structure of GUI

References handle.notify.

annotationTable_CellSelectionCallback()

function mibAnnotationsController.annotationTable_CellSelectionCallback

(

Indices

)

a callback for cell selection of obj.View.handles.annotationTable

Parameters

Indices

index of the selected cell, returned by eventdata.Indices structure of GUI

annotationTable_KeyPressFcn()

function mibAnnotationsController.annotationTable_KeyPressFcn

(

eventdata

)

callback from key pressed within the obj.View.handles.annotationTable

Required fields of eventdata:

closeWindow()

function mibAnnotationsController.closeWindow

(

)

closing mibAnnotationsController window

References handle.isvalid, and handle.notify.

deleteBtn_Callback()

function mibAnnotationsController.deleteBtn_Callback

(

)

delete all annotations

References handle.notify.

findChildId()

function id = mibAnnotationsController.findChildId

(

childName

)

find id of a child controller, see more in mibController.findChildId

Parameters

childName

name of a child controller

Return values

id	index of the requested child controller or empty if it is not open

loadBtn_Callback()

function mibAnnotationsController.loadBtn_Callback

(

)

load annotation from a file or import from Matlab

References amiraLandmarks2points(), handle.disp, mib_uigetfile(), mibInputMultiDlg(), N, handle.notify, Labels.replaceLabels(), and handle.sort.

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mibAnnotationsGUI_KeyPressFcn()

function mibAnnotationsController.mibAnnotationsGUI_KeyPressFcn

(

eventdata

)

callback from key presses within the mibAnnotationsGUI

Required fields of eventdata:

precisionEdit_Callback()

function mibAnnotationsController.precisionEdit_Callback

(

)

callback for modification of the precision parameter for the annotation values

References editbox_Callback(), and handle.notify.

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purgeControllers()

static function mibAnnotationsController.purgeControllers ( obj, src, evnt )

static

find index of the child controller and purge it

Required fields of obj:

resortTablePopup_Callback()

function mibAnnotationsController.resortTablePopup_Callback

(

)

Resort the list of annotation labels.

saveAnnotationsToFile()

function mibAnnotationsController.saveAnnotationsToFile	(		labelText,
			labelPosition,
			labelValue )

save annotations to a file

Parameters

labelText	labels of annotations, cell array
labelPosition	a matrix with coordinates for the annotations
labelValue	an array with annotation values

References max, and mibInputMultiDlg().

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saveBtn_Callback()

function mibAnnotationsController.saveBtn_Callback

(

)

save annotations to a file or export to Matlab

References mibInputDlg().

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settingsBtn_Callback()

function mibAnnotationsController.settingsBtn_Callback

(

)

define additional settings for the annotations

References mibInputMultiDlg(), and handle.notify.

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startController()

function mibAnnotationsController.startController	(		controllerName,
			varargin )

start a child controller using provided name, see more in see more in mibController.startController

Parameters

controllerName	a string with name of a child controller, for example, mibImageAdjController
varargin	additional optional controllers or parameters

References handle.addlistener, and mibAnnotationsController().

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tableContextMenu_cb()

function mibAnnotationsController.tableContextMenu_cb

(

parameter

)

callbacks for the context menu of obj.View.handles.annotationTable

Parameters

parameter

a string with selected option 'Add' - add annotations 'Modify' - batch modify selected annotations 'Rename' - rename selected annotations 'Jump' - jump to the selected annotation 'Count' - count annotations 'Clipboard' - copy selected annotations to the system clipboard 'CropPatches' - crop patches from image around selected annotations 'Mask' - copy selected annotations to the mask layer 'Interpolate' - interpolate between two selected annotations; add result as new annotations 'Export' - export/save annotations to matlab or to a file 'Imaris' - export annotations to Imaris 'OrderTop', 'OrderUp', 'OrderDown', 'OrderBottom' - change order of the annotation in the list 'Delete' - delete selected annotations

References A(), cell2clip(), max, mibInputMultiDlg(), mibSetImarisSpots(), min, handle.notify, and handle.sort.

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updateWidgets()

function mibAnnotationsController.updateWidgets

(

)

update annotation table

ViewListner_Callback2()

static function mibAnnotationsController.ViewListner_Callback2 ( obj, src, evnt )

static

Member Data Documentation

batchModifyExpressionFactor

mibAnnotationsController.batchModifyExpressionFactor

factor to modify value

batchModifyExpressionOperation

mibAnnotationsController.batchModifyExpressionOperation

operation

BatchOpt

mibAnnotationsController.BatchOpt

BatchOpt structure.

childControllers

mibAnnotationsController.childControllers

list of opened subcontrollers

childControllersIds

mibAnnotationsController.childControllersIds

a cell array with names of initialized child controllers

closeEvent

EVENT mibAnnotationsController.closeEvent

> Description of events event firing when window is closed

Events

closeEvent

imarisOptions

mibAnnotationsController.imarisOptions

a structure with export options for imaris .radii - number with default radius .color - default color [Red Green Blue Alpha] in range from 0 to 1; .name - default name

indices

mibAnnotationsController.indices

indices of selected annotations in the table

jScroll

mibAnnotationsController.jScroll

java handle to the scroll bar of obj.View.handles.annotationTable

jTable

mibAnnotationsController.jTable

java handle to the obj.View.handles.annotationTable

listener

mibAnnotationsController.listener

a cell array with handles to listeners

mibModel

mibAnnotationsController.mibModel

handles to the model

Referenced by mibAnnotationsController().

View

mibAnnotationsController.View

handle to the view

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The documentation for this class was generated from the following file:

• Classes/@mibAnnotationsController/mibAnnotationsController.m