Microscopy Image Browser  1.233
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Tools Directory Reference
Directory dependency graph for Tools:
Tools

Directories

directory  Align
 
directory  AreaAnalysis
 
directory  RegionGrowing
 

Files

file  calc_correlation.m
 Calculate correlation coefficients for img, script to run from Correlation panel of im_browser.
 
file  generate_grid_block_size.m
 Calculate size of the block to equally brake the image.
 
file  ib_addText2Img.m
 Add text label to the image.
 
file  ib_calcCorrelation.m
 Calculate correlation coefficients between frames in the XY plane.
 
file  ib_calculatePixSizes.m
 Recalculate pixel size (width, height) of the dataset to new units.
 
file  ib_calculateResolution.m
 Calculate image resolution in Inch as default for saving tifs.
 
file  ib_connect_points.m
 Connect points with search for a minimum gradients.
 
file  ib_connectPoints.m
 Generate a bitmap image with lines that connect points (pnts)
 
file  ib_flipDataset.m
 Flip dataset horizontally, vertically or in the Z direction.
 
file  ib_interpolateLines.m
 Interpolate lines between the slices.
 
file  ib_interpolateShapes.m
 Interpolate the shapes between the slices.
 
file  ib_invertImage.m
 Invert image.
 
file  ib_maskGenerator.m
 generate the Mask later
 
file  ib_renderModel.m
 Render a model using isosurfaces.
 
file  ib_rotateDataset.m
 Rotate dataset in 90 or -90 degrees.
 
file  ib_segmentation_3dBall.m
 Do segmentation using the 3D ball tool.
 
file  ib_segmentation_Annotation.m
 Add text annotation to the dataset.
 
file  ib_segmentation_Brush.m
 Do segmentation using the brush tool.
 
file  ib_segmentation_Lasso.m
 Do segmentation using the lasso tool.
 
file  ib_segmentation_MagicWand.m
 Do segmentation using the Magic Wand tool.
 
file  ib_segmentation_MembraneClickTraker.m
 [output, handles] = ib_segmentation_MembraneClickTraker(yxzCoordinate, yx, modifier, handles) Trace membranes and draw a straight lines in 2d and 3d
 
file  ib_segmentation_ObjectPicker.m
 handles = ib_segmentation_ObjectPicker(yxzCoordinate, modifier, handles) Do a the targeted selection from Mask/Models layers
 
file  ib_segmentation_RegionGrowing.m
 Do segmentation using the Region Growing method.
 
file  ib_segmentation_SmartWatershed.m
 handles = ib_segmentation_SmartWatershed(modifier, handles) Do segmentation using the smart watershed. This function is a stripped version of the Watershed segmentation tool available from Menu->Tools->Watershed segmentation.
 
file  ib_segmentation_Spot.m
 handles = ib_segmentation_Spot(y, x, modifier, handles) Do segmentation using the spot tool
 
file  ib_segmentBlackWhiteThreshold.m
 Perform black and white thresholding for BW Threshold tool of the 'Segmentation panel'.
 
file  ib_sizeExclusionFilter.m
 Apply size exclusion filter on selection, model, or mask layers.
 
file  ib_transposeDataset.m
 Transpose dataset physically between dimensions.
 
file  ib_updatePixSizeAndResolution.m
 Calculate update resolution fields in the imageData.img_info(ImageDescription) or recalculate physical size of voxels.
 
file  mark2selection.m
 Place identification symbols to the selection layer.
 
file  mib_compile_c_files.m
 This script will compile all the C files % Compiling coherence filter.
 
file  mib_resize3d.m
 Resize 3D dataset.
 
file  mib_stereologyGui.m
 MIB_STEREOLOGYGUI MATLAB code for mib_stereologygui.fig MIB_STEREOLOGYGUI, by itself, creates a new MIB_STEREOLOGYGUI or raises the existing singleton*.