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| file | calc_correlation.m |
| | Calculate correlation coefficients for img, script to run from Correlation panel of im_browser.
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| |
| file | generate_grid_block_size.m |
| | Calculate size of the block to equally brake the image.
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| |
| file | ib_addText2Img.m |
| | Add text label to the image.
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| |
| file | ib_calcCorrelation.m |
| | Calculate correlation coefficients between frames in the XY plane.
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| |
| file | ib_calculatePixSizes.m |
| | Recalculate pixel size (width, height) of the dataset to new units.
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| |
| file | ib_calculateResolution.m |
| | Calculate image resolution in Inch as default for saving tifs.
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| |
| file | ib_connect_points.m |
| | Connect points with search for a minimum gradients.
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| |
| file | ib_connectPoints.m |
| | Generate a bitmap image with lines that connect points (pnts)
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| |
| file | ib_flipDataset.m |
| | Flip dataset horizontally, vertically or in the Z direction.
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| |
| file | ib_interpolateLines.m |
| | Interpolate lines between the slices.
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| |
| file | ib_interpolateShapes.m |
| | Interpolate the shapes between the slices.
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| |
| file | ib_invertImage.m |
| | Invert image.
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| |
| file | ib_maskGenerator.m |
| | generate the Mask later
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| |
| file | ib_renderModel.m |
| | Render a model using isosurfaces.
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| |
| file | ib_rotateDataset.m |
| | Rotate dataset in 90 or -90 degrees.
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| |
| file | ib_segmentation_3dBall.m |
| | Do segmentation using the 3D ball tool.
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| |
| file | ib_segmentation_Annotation.m |
| | Add text annotation to the dataset.
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| |
| file | ib_segmentation_Brush.m |
| | Do segmentation using the brush tool.
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| |
| file | ib_segmentation_Lasso.m |
| | Do segmentation using the lasso tool.
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| |
| file | ib_segmentation_MagicWand.m |
| | Do segmentation using the Magic Wand tool.
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| |
| file | ib_segmentation_MembraneClickTraker.m |
| | [output, handles] = ib_segmentation_MembraneClickTraker(yxzCoordinate, yx, modifier, handles) Trace membranes and draw a straight lines in 2d and 3d
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| |
| file | ib_segmentation_ObjectPicker.m |
| | handles = ib_segmentation_ObjectPicker(yxzCoordinate, modifier, handles) Do a the targeted selection from Mask/Models layers
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| |
| file | ib_segmentation_RegionGrowing.m |
| | Do segmentation using the Region Growing method.
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| |
| file | ib_segmentation_SmartWatershed.m |
| | handles = ib_segmentation_SmartWatershed(modifier, handles) Do segmentation using the smart watershed. This function is a stripped version of the Watershed segmentation tool available from Menu->Tools->Watershed segmentation.
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| |
| file | ib_segmentation_Spot.m |
| | handles = ib_segmentation_Spot(y, x, modifier, handles) Do segmentation using the spot tool
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| |
| file | ib_segmentBlackWhiteThreshold.m |
| | Perform black and white thresholding for BW Threshold tool of the 'Segmentation panel'.
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| |
| file | ib_sizeExclusionFilter.m |
| | Apply size exclusion filter on selection, model, or mask layers.
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| |
| file | ib_transposeDataset.m |
| | Transpose dataset physically between dimensions.
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| |
| file | ib_updatePixSizeAndResolution.m |
| | Calculate update resolution fields in the imageData.img_info(ImageDescription) or recalculate physical size of voxels.
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| |
| file | mark2selection.m |
| | Place identification symbols to the selection layer.
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| |
| file | mib_compile_c_files.m |
| | This script will compile all the C files % Compiling coherence filter.
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| |
| file | mib_resize3d.m |
| | Resize 3D dataset.
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| |
| file | mib_stereologyGui.m |
| | MIB_STEREOLOGYGUI MATLAB code for mib_stereologygui.fig MIB_STEREOLOGYGUI, by itself, creates a new MIB_STEREOLOGYGUI or raises the existing singleton*.
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| |
1.8.3.1 
