GuiTools Directory Reference

Directory dependency graph for GuiTools:

Directories
directory	volren

Files
file	backgroundRemovalGUI_Callback.m
	a callback to action done with the handles.backgroundPanel
file	backgroundStrelSmoothingChk_Callback.m
	a callback to the handles.backgroundStrelSmoothingChk
file	brushSuperpixelsCheck.m
	— Executes on button press in brushSupervoxelsCheck.
file	bufferToggles_cb.m
	A callback function for the popup menu of the buffer buttons in the upper part of the Directory contents panel. This callback is triggered from all those buttons.
file	changelayerEdit_Callback.m
	A callback for changing the slices of the 3D dataset by entering the new slice number.
file	changelayerSlider_Callback.m
	A callback function for handles.changelayerSlider. Responsible for showing next or previous slice of the dataset.
file	changeTimeEdit_Callback.m
	A callback for changing the time points of the dataset by entering a new time value.
file	changeTimeSlider_Callback.m
	A callback function for handles.changeTimeSlider. Responsible for showing next or previous time point of the dataset.
file	channelMixerTable_CellSelectionCallback.m
	A cell selection callback function function for the handles.ib_channelMixerTable table.
file	createModelBtn_Callback.m
	Create Model.
file	editbox_Callback.m
	Check for entered values in an edit box and switch the focus to handles.updatefilelistBtn.
file	filesListboxContext_cb.m
	a context menu to the to the handles.filesListbox, the menu is called with the right mouse button
file	getClickPoint.m
	A function that gets ginput function to pick a point within imageAxes.
file	ib_aboutDlg.m
	IB_ABOUTDLG MATLAB code for ib_aboutDlg.fig IB_ABOUTDLG, by itself, creates a new IB_ABOUTDLG or raises the existing singleton*.
file	ib_addIcons.m
	add icons to the menus
file	ib_channelMixerTable_Callback.m
	A callback function for the handles.ib_channelMixerTable table.
file	ib_checkUpdate.m
	IB_CHECKUPDATE MATLAB code for ib_checkUpdate.fig IB_CHECKUPDATE, by itself, creates a new IB_CHECKUPDATE or raises the existing singleton*.
file	ib_cropGui.m
	ib_cropGui function is responsible for the crop of dataset.
file	ib_datasetInfoGui.m
	ib_datasetInfoGui is a GUI window that shows parameters of the dataset
file	ib_do_backup.m
	Store the dataset for Undo.
file	ib_do_undo.m
	Undo the recent changes with Ctrl+Z shortcut.
file	ib_getDataset.m
	Get complete 4D volume of the dataset, a wrapper function.
file	ib_getSlice.m
	Get the 2D slice from the dataset, the wrapper function.
file	ib_getStack.m
	Get the 3D volume from the dataset, a wrapper function.
file	ib_labelsGui.m
	ib_labelsGui is a GUI tool to show list of labels
file	ib_moveLayers.m
	to move information between the layers.
file	ib_resampleGui.m
	ib_resampleGui function is responsible for resampling of datasets.
file	ib_setDataset.m
	Update complete 4D volume of the dataset, a wrapper function.
file	ib_setSlice.m
	Update the 2D slice of the dataset, the wrapper function.
file	ib_setStack.m
	Update a 3D stack of the dataset, a wrapper function.
file	ib_updateCursor.m
	handles = ib_updateCursor(handles, mode) Update brush cursor
file	ib_updateFontSize.m
	Update font size for text widgets.
file	im_browser_brush_scrollWheelFcn.m
	Control callbacks from mouse scroll wheel during the brush tool.
file	im_browser_CloseRequestFcn.m
	— Executes when user attempts to close im_browser.
file	im_browser_filesListbox_Callback.m
	im_browser_filesListbox_Callback(hObject, eventdata, handles) navigation in the file list, i.e. open file or change directory
file	im_browser_panAxesFcn.m
	This function is responsible for moving image during panning.
file	im_browser_PanelShiftBtnUpFcn.m
	this is callback for the release of a mouse button over handles.separatingPanel to change size of Directory contents and Segmentation panels
file	im_browser_ResizeFcn.m
	resizing for panels of MIB
file	im_browser_scrollWheelFcn.m
	Control callbacks from mouse scroll wheel.
file	im_browser_WindowBrushMotionFcn.m
	This function draws the brush trace during use of the brush tool.
file	im_browser_WindowButtonDownFcn.m
	this is callback for the press of a mouse button
file	im_browser_WindowButtonUpFcn.m
	callback for release of the mouse button
file	im_browser_WindowKeyPressFcn.m
	hObject handle to im_browser (see GCBO) eventdata structure with the following fields (see FIGURE) Key: name of the key that was released, in lower case Character: character interpretation of the key(s) that was released Modifier: name(s) of the modifier key(s) (i.e., control, shift) released handles structure with handles and user data (see GUIDATA) disp(eventdata.Key); disp(eventdata.Character); disp(eventdata.Modifier);
file	im_browser_WindowKeyPressFcn_BrushSuperpixel.m
	a function to check key callbacks when using the Brush in the Superpixel mode hObject handle to im_browser (see GCBO) eventdata structure with the following fields (see FIGURE) Key: name of the key that was released, in lower case Character: character interpretation of the key(s) that was released Modifier: name(s) of the modifier key(s) (i.e., control, shift) released handles structure with handles and user data (see GUIDATA) disp(eventdata.Key); disp(eventdata.Character); disp(eventdata.Modifier);
file	im_browser_WindowKeyReleaseFcn.m
	hObject handle to im_browser (see GCBO) eventdata structure with the following fields (see FIGURE) Key: name of the key that was released, in lower case Character: character interpretation of the key(s) that was released Modifier: name(s) of the modifier key(s) (i.e., control, shift) released handles structure with handles and user data (see GUIDATA)
file	im_browser_winMouseMotionFcn.m
	returns coordinates and image intensities under the mouse cursor
file	imAdjustBtn_Callback.m
	Open image adjustments dialog.
file	imAdjustments.m
	imAdjustments function allows to adjust contrast and gamma of the shown dataset.
file	imageFilterDoitBtn_Callback.m
	a callback to the handles.imageFilterDoitBtn, filters image with the selected filter
file	imageFilterPopup_Callback.m
	a callback to the handles.imageFilterPopup, modifies panels with respect to the selected filter type
file	imfiltPar1Edit_Callback.m
	a callback to the handles.imfiltPar1Edit, checks parameters for image filters
file	imfiltPar2Edit_Callback.m
	a callback to the handles.imfiltPar2Edit, checks parameters for image filters
file	loadModelBtn_Callback.m
	a callback to the handles.loadModelBtn, loads model to MIB from a file
file	localNormSigmaSlider_Callback.m
	a callback to the handles.localNormSigmaSlider
file	logList.m
	logList function calls a window with Log list of actions that were performed with the dataset.
file	magicwandMethodPopup_Callback.m
	a callback to the handles.magicwandMethodPopup, allowing selection of method for the MagicWand-RegionGrowing tool
file	maskShowCheck_Callback.m
	a callback to the handles.maskShowCheck, allows to toggle visualization of the mask layer
file	menuDatasetAlignDatasets.m
	a callback to Menu->Dataset->Alignment tool align the dataset or stitch several datasets
file	menuDatasetBoundingBox.m
	a callback to Menu->Dataset->Bounding Box... set manually the parameters for the bounding box
file	menuDatasetCrop.m
	a callback to Menu->Dataset->Crop dataset... starts the Crop dialog
file	menuDatasetResample.m
	a callback to Menu->Dataset->Resample... starts the Resample dialog
file	menuDatasetSlice.m
	a callback to Menu->Dataset->Slice do actions with individual slices
file	menuDatasetTransform.m
	a callback to Menu->Dataset->Transform... do different transformation with the dataset
file	menuFileChoppedImage.m
	a callback to Menu->File->Chopped Images, imports/exports large datasets from/to smaller datasets
file	menuFileExportImage.m
	a callback to the handles.menuFileExportImage, exports image and meta-data from MIB to the main Matlab workspace or Imaris
file	menuFileImportImage.m
	a callback to Menu->File->Import Image, imports model from Matlab main workspace or system clipboard
file	menuFileMakeMovie.m
	a callback to Menu->File->Make movie, renders a movie file.
file	menuFileOmeroImport.m
	a callback to Menu->File->OMERO Import, imports data from OMERO server.
file	menuFilePreferences.m
	a callback to Menu->File->Preferences, opens the Preferences dialog
file	menuFileSaveImageAs.m
	a callback to the handles.menuFileSaveImageAs, saves image to a file
file	menuFileSnapshot.m
	a callback to Menu->File->Make snapshot, renders a snapshot of the shown area.
file	menuImageColorCh.m
	a callback to Menu->Image->Color Channels do actions with individual color channels
file	menuImageContrast.m
	a callback to Menu->Image->Contrast do contrast enhancement
file	menuImageConvert.m
	a callback to the Menu->Image->Mode, convert image to different formats
file	menuImageIntensity.m
	a callback to Menu->Image->Intensity Profile get intensity values.
file	menuImageMode.m
	a callback to the Menu->Image->Mode, convert image to different formats
file	menuImageProfileArbitrary_Callback.m
	a callback to the handles.menuImageProfileLine, generates a profile of image intensities under an arbitrary line
file	menuImageProfileLine_Callback.m
	a callback to the handles.menuImageProfileLine, generates a profile of image intensities under a line
file	menuMaskImport.m
	a callback to Menu->Mask->Import imports the Mask layer from the main Matlab workspace
file	menuMaskInvert.m
	a callback to Menu->Mask->Invert inverts the Mask layer
file	menuMaskLoad.m
	a callback to Menu->Mask->Load Mask loads the Mask layer to MIB from a file
file	menuMaskSaveAs.m
	a callback to Menu->Mask->Save As saves the Mask layer to a file
file	menuModelFillMembrane.m
	a callback to Menu->Model->FillMembrane an experimental function to extend membranes such that the membranes are connected between the slices and holes are eliminated
file	menuModelsExport.m
	a callback to Menu->Models->Export export the Model layer to the main Matlab workspace
file	menuModelsImport.m
	a callback to Menu->Models->Import imports the Model layer from the main Matlab workspace
file	menuModelsSaveAs.m
	a callback to Menu->Models->Save as saves model to a file
file	menuSelectionBuffer.m
	a callback to Menu->Selection to Buffer... Copy/Paste/Clear of the selection of the shown layer
file	menuSelectionBufferCopy_Callback.m
	store the selection from the current layer to a buffer
file	menuSelectionInterpolate.m
	a callback to the Menu->Selection->Interpolate; interpolates shapes of the selection layer
file	menuSelectionInvert.m
	a callback for Menu->Selection->Invert invert selection layer
file	menuSelectionToMaskBorder.m
	a callback to Menu->Selection->Expand to Mask border expand selection to borders of the Masked layer
file	menuToolsMeasure.m
	a callback to Menu->Tools->Measure length
file	mib_BoundingBoxDlg.m
	custom input dialog
file	mib_calibrateScaleBar.m
	Obtain physical X and Y size of pixels using a scale bar plotted on the loaded image.
file	mib_contrastContext_cb.m
	adjust contrast context menu callback
file	mib_inputdlg.m
	custom input dialog
file	mib_keyShortcutsDlg.m
	MIB_KEYSHORTCUTSDLG MATLAB code for mib_keyShortcutsDlg.fig MIB_KEYSHORTCUTSDLG, by itself, creates a new MIB_KEYSHORTCUTSDLG or raises the existing singleton*.
file	mib_measureTool.m
	MIB_MEASURETOOL MATLAB code for mib_measureTool.fig MIB_MEASURETOOL, by itself, creates a new MIB_MEASURETOOL or raises the existing singleton*.
file	mib_rescaleWidgets.m
	rescale widgets for different operating systems
file	model_cm_Callback.m
	a context menu to the to the handles.segmList (Materials list of the Segmentation panel), the menu is called with the right mouse button
file	modelShowCheck_Callback.m
	Toggle the Model layer on/off.
file	pixInfo_cb.m
	center image to defined position it is a callback from a popup menu above the pixel information field of the Path panel
file	preferencesDlg.m
	varargout = preferencesDlg(varargin) preferencesDlg a dialog responsible for setting preferences for im_browser.m
file	redrawChannelMixerTable.m
	Update handles.channelMixerTable table and handles.ColChannelCombo color combo box.
file	removeMaterialBtn_Callback.m
	a callback to the handles.removeMaterialBt, removes selected material from the model
file	roiAddBtn_Callback.m
	a callback to the handles.roiAddBtn, adds a roi to a dataset
file	roiList_cm_Callback.m
	a context menu to the to the handles.roiList, the menu is called with the right mouse button
file	roiLoadBtn_Callback.m
	a callback to the handles.roiLoadBtn, loads roi from a file to MIB
file	roiRemoveBtn_Callback.m
	a callback to the handles.roiRemoveBtn, removes selected roi from a list of rois
file	roiRoiToSelectionBtn_Callback.m
	a callback from the ROI to Selection button in the ROI panel to copy areas under the shown ROIs to the Selection layer
file	roiSaveBtn_Callback.m
	a callback to the handles.roiSaveBtn, saves roi to a file using matlab format
file	roiShowCheck_Callback.m
	toggle show/hide state of ROIs, as callback of handles.roiShowCheck
file	roiTypePopup_Callback.m
	a callback for selection of the handles.roiTypePopup combo box with selection of ROI type to add
file	saveModelToolbar_ClickedCallback.m
	a callback to the handles.saveModelToolbar, saves the model in the matlab format to the specified file
file	scrollbarClick_Callback.m
	this is callback for the press of a mouse button above specified scroll bar
file	segmSelectedOnlyCheck_Callback.m
	a callback to the handles.segmSelectedOnlyCheck, allows to toggle state of the Fix selection to material
file	selectionButton_Callback.m
	a callback to the handles.selectionButton_Callback, allows to add, subtract or replace selection
file	selectionClearBtn_Callback.m
	a callback to the handles.selectionClearBtn, allows to clear the Selection layer
file	selectionDilateBtn_Callback.m
	a callback to the handles.selectionDilateBtn, expands the selection layer
file	selectionErBtn_Callback.m
	a callback to the handles.selectionErBtn, shrinks the selection layer
file	selectionFillBtn_Callback.m
	a callback to the handles.selectionFillBtn, allows to fill holes for the Selection layer
file	seltypePopup_Callback.m
	a callback to the handles.seltypePopup, allows to select tool for the segmentation
file	smoothImage_Callback.m
	a callback to the smooth buttons and menus
file	toolbar_zoomBtn.m
	modifies magnification using the buttons in the toolbar of MIB
file	toolbarInterpolation.m
	Function to set the state of the interpolation button in the toolbar.
file	toolbarPlaneToggle.m
	a callback to the change orientation buttons in the toolbar of MIB; it toggles viewing plane: xy, zx, or zy direction
file	toolbarResizingMethod.m
	Function to set type of image interpolation for the visualization.
file	unFocus.m
	move focus to the main window
file	update_drives.m
	updates list of available logical disk drives
file	update_filelist.m
	Update List of files in the current directory.
file	updateGuiWidgets.m
	Update user interface widgets based on the properties of the opened dataset.
file	updateMIB.m
	UPDATEMIB MATLAB code for updateMIB.fig UPDATEMIB, by itself, creates a new UPDATEMIB or raises the existing singleton*.
file	updateSegmentationLists.m
	Update Segmetation Lists in the main window of im_browser.m.
file	zoomEdit_Callback.m
	a callback function for modification of the handles.zoomEdit