Version 1.00 19.11.2015
• Added X/Y calibration of the loaded dataset using an existing scale bar printed on images (Menu->Dataset->Scale bar)
• Replaced function that calculates adjacency of supervoxels in the graphcut and classifier tools to Region Adjacency Graph (RAG) by David Legland
• Added Stereology mode to count intersections of materials of the model with a grid lines (Menu->Tools->Stereology)
• Added watershed superpixels and supervoxels to the graphcut segmentation
• Added watershed superpixels to the Brush tool
• Added watershed superpixels/supervoxels to the superpixel classifier
• Added customization dialog for key shortcuts (File->Preference->Shortcuts)
• Added detection of LUTs for color channels when using the Bio-Formats reader
• minor fixes

Version 0.999 30.09.2015
• Added Maxflow/mincut semi-automatic segmentation (Menu->Tools->Watershed/Graphcut segmentation)
• Added Supervoxel/superpixel based classifier (Menu->Tools->Classifiers->Supervoxels classification)
• Added a mode for chopping and combining back large images (Menu->File->Chop images...)
• Added possibility to calculate multiple properties of objects in the Get Statistics... dialog (Menu->Models->Model Statistics...)
• Added rendering of measurements to snapshots
• Added modification of the adaptive coefficient for the brush with the supervoxels mode: while drawing use the mouse wheel to change the coefficient
• Added Undo for the Brush tool with superpixels, while selecting superpixels press the Ctrl+Z shortcut to undo selection of the last superpixel
• Added RegionGrowing mode to the Magic Wand tool
• Added Affine Transformation mode to the Alignment tool
• Added new methods to access the dataset: imageData.getData3D, imageData.getData4D, imageData.getData5D, imageData.setData3D, imageData.setData4D, imageData.setData5D that replace old methods imageData.getDataset and imageData.setDataset
• Added possibility to crop dataset based on detected 2D objects: Menu->Model Statistics...->Run->Select objects and press the right mouse button->Crop to a file/matlab...
• Modified syntax of the imageData.getDatasetDimensions method call
• Modified Make video dialog: now it is not modal; added back-and-forth option
• Preserve the current magnification during the orientation switch using the Alt+1, Alt+2 and Alt+3 shortcuts

Version 0.998 05.05.2015
• Added stand-alone version for Mac OS (tested with OS X Yosemite, ver. 10.10.3 and MATLAB R2014b)
• Added Measure Tool (Menu->Tools->Measure length->Measure tool)
• Added the superpixels mode for the brush tool
• Added possibility to crop dataset based on detected 3D objects: Menu->Model Statistics...->Run->Select objects and press the right mouse button->Crop to a file/matlab...
• Completely rewritten roiRegion class to perform faster in the R2014b and later
• Added possibility to change font name in the Menu->File->Preferences dialog
• Fixed many issues with Linux and MacOS compatibility

Version 0.997 24.03.2015
• Added highlighting of the current file, when switching the buffers
• Added names of series during opening of datasets using Bioformats
• Added morphological filters to the Mask Generators panel: imextendedmax, imextendedmin, imregionalmax, imregionalmin
• Added a context menu to the Pixel Information text of the Path panel for instant jump to desired position within the dataset
• Added a new dialog to define coordinates of the bounding box
• Update: colors of materials are stored with the ImageData class, now the colors are also saved together with the model
• Update: the LUT colors are stored in the imageData class
• Update: Bio-formats library is now bioformats_package.jar
• Update: Connection to Imaris
• Modified the Mask Generators panel
• Fixed opening of images with different XY and color channels using Bioformats
• Fixed generation of JPG snapshots for 16-bit images
• Fixed triggering of the key press callback during the pan mode
• Fixed dublicates of the brush cursor in some situations

Version 0.996 06.03.2015
• Adaptation to MATLAB R2014b
• Added CZI format to the list of extensions
• Added a custom input dialog
• Annotations and measure tools are available when the model/selection layers are turned off
• Updated to the new server for updates, at http://mib.helsinki.fi
• Multiple fixes in the mode when the model/selection layers are turned off
• Bug fixes

Version 0.995 14.01.2015
• Adaptation to MATLAB R2014b
• Added Smart Watershed to the segmentation tools (Segmentation panel->Selection type->Smart watershed); see also improved watershed tool
• Added number of morphological operations for images: Menu->Image->Morphological operations
• Added increase of the brush size by ~40% when starting the Erase mode (by holding the Control key)
• Added import/export images from Imaris : Menu->File->Import(Export)->Imaris (requires Imaris and ImarisXT)
• Added import images from URL link: Menu->File->Import->URL
• Added Annotations to the statistical filtering window. The right mouse button above the Statistics table starts a popup menu with access to annotations.
• Added Gradient 2D and Gradient 3D filters to the Image Filters panel
• Added tools for manipulation with the colormaps in the Preferences dialog
• Added rendering models with Imaris: Menu->Models->Render model...->Imaris
• Added calculation of the following properties for 3D objects: MajorAxisLength, SecondMajorAxisLength, MinorAxisLength, MeriodionalEccentricity, EquatorialEccentricity
• Added Zoom in/out using the Alt+Mouse wheel combination
• Many functions moved from im_browser.m to a separate files located in the GuiTools directory
• Improved rendering of large images using the 'nearest' resampling mode
• Updated and significantly improved the watershed tool
• Renamed the Mask/Model segmentation tool to Object Picker
• Fixed import of models with more colors than defined in MIB
• Fixed rotation of datasets with the Mask or Model layers
• Moved Top and Bottom hat filters to the morphological operations for images: Menu->Image->Morphological operations

Version 0.9941 23.09.2014
• Added color palettes for materials of models, Menu->File->Preferences->Colors
• Added conversion to HSV colorspace, test version
• Added possibility to plot a histogram in the Statistics dialog
• Added restore default settings button to the Preferences window
• Added paste from Clipboard: Menu->File->Import image from->Clipboard
• Rearranged files/directories
• Updated BioFormats reader
• Fixed bugs with dynamic sliders in the deployed version
• Fixed bug in the wrong shifts of datasets during alignment
• Fixed bug with ROI during duplication of datasets

Version 0.9932 23.06.2014
• Added the Random forest classifier for tests, original functions from Verena Kaynig and randomforest-matlab by Abhishek Jaiantilal
• Added EndPointsLength statistics for 3D lines
• Updated EndPointsLength statistics is now reported in the image units
• Updated the Make Snapshot dialog
• Updated the Image Adjustment dialog
• Updated the Magic Wand tool: it is possible to specify an effective radius of for the tool
• Updated the Spot tool: much faster
• Fixed MembraneClickTracker tool for straight lines in 3D with width = 1 and for the points at the edge of the image
• Fixed saving of individual materials of the models

Version 0.9931 22.05.2014
• Added: conversion of multichannel images to greyscale
• Improved: refreshing of the opened auxiliary windows
• Updated: the watershed segmentation was updated to seeded watershed
• Fixed: image rescaling during resize of the main window

Version 0.9930 20.05.2014
• Added a layer for Annotations, a label that may be placed at desired part of the dataset (Segmentation panel->Selection type->Annotations)
• Improved speed of image generation when the Show model switch is On
• Some sliders were updated to allow real-time feedback
• Modified the Segmentation panel by introducing the Show all checkbox
• Added possibility to synchronize the views between opened datasets. Use a popup menu for the buffer buttons in the Directory contents panel
• Added indication of intensity of the 4th color channel during the mouse move above the image
• Added Rectangle, Ellipse and Polyline type of selections to the Lasso segmentation tool
• Added possibility to use original filenames when saving dataset in Jpeg, PNG and TIF formats
• Added possibility to see a single channel using a Ctrl+left mouse click above the checkboxes of the Colors table in the View settings panel
• Added sorting by slice number to the Get Statistics dialog (right mouse click above the Sort button)
• Updated the Adjust Display dialog with colors and right mouse callbacks for the sliders to set sliders to 0 and maximal possible values
• Improved BioFormats reading dialog
• Fixed saving models (removed the Selection and Mask layers) using the Save Model button in the toolbar
• Fixed generation of statistics for the currently shown slice

Version 0.9923 20.03.2014
• Changed implementation of the Membrane Click Tracker tool. Now Shift+mouse click defines the first point of the membrane domain
• Fixed very long parameter names in the Dataset Info window; added display in the upper part of the Dataset Info window to show entry in the selected cell
• The Image Profile functions were updated for multicolored datasets

Version 0.9922 06.03.2014
• Added the Interpolation type button to the toolbar
• Added possibility to insert another dataset to the opened dataset
• Skip dataset selection for BioFormats reader, when only one dataset present
• Extended filename information of the current dataset in the View Image Panel
• Several bug fixes and improvements

Version 0.9921 25.02.2014
• Added watershed segmentation, Menu->Tools->Watershed
• Added support for NRRD format, a native format of 3D slicer
• Added file name to the title of the Image View panel
• Added landmark alignment mode for the opened datasets, some fixes of the alignment
• Renamed Menu->Measure to Menu->Tools
• Modified formation of Z stacks with datasets of different dimensions, now the data is not cropped
• The brightness slider in the View settings panel was replaced with the live stretch check box. When enabled im_browser automatically adjust contrast for each shown image; but only for preview, the actual image intensities will not be affected
• Fixed auto-updater for MATLAB release R2012a and older
• Fixed Delete Slice for multiple slices

Version 0.9919 11.02.2014
• Added posibility to define a step for thresholding sliders in the BW thresholding selection tool, available via a popup menu (right mouse click on the sliders)
• Fixed import models bug
• Set the Column Format in the Value column of the MaskStatsDlg to the 'short g' representation

Version 0.9917 10.02.2014
• Added possibility to change font size
• Added a context menu to the Adjust channel button of the Display adjustment dialog. The menu allows contrast adjustment of the currenly shown slice
• Updated selection of the fast-access tools for the "D" key shortcut. Now the tools can be selected using the D checkbox in the Segmentation panel

Version 0.9916 31.01.2014
• Improved brush performance for the brush size

Version 0.9915 30.01.2014
• Added MATLAB normalized 2-D cross-correlation to the Alignment options for tests
• It is possible to open multiple series using BioFormats reader
• Updated Stop Fiji routine
• Improved sensitivity of the Membrane ClickTracker tool
• Fixed network update for the deployed version
• Fixed background colors in some windows

Version 0.9914 25.11.2013
• Large update of the ROI mode. Now the ROIs are bound to the image dataset, so it is possible to have set of ROI for each opened image
• Added positioning of the logList window to the bottom of the main window
• Fixed ib_maskGenerator.m for multi-colored datasets
• Fixed implementation of BioFormats for the deployed version

Version 0.9913 19.11.2013
• Added store position of the selected mode in the Get Statistics dialog, plus some other modifications in the same dialog
• Fixed a bug in the imageData.plotImage function, when the brightness slider is used
• Added delete the maskStatsDlg and ib_datasetInfoGui dialogs after close of im_browser

Version 0.9912 15.11.2013
• Added Duplicate dataset to the context menu of the buffer buttons: Directory Contents->Buffer buttons->right mouse click->Duplicate dataset
• Added 'Enter' and 'Esc' shortcuts to Load Bioformats, make snapshot, make movie, morph ops dialogs
• Added synchronozation of Image Info tables between different datasets, using FindJObj.m function
• Moved all functions from ImageData class to own files
• Updated coloring of the brush tool during the brush motion for 16bit images

Version 0.9911 13.11.2013
• Added a new window for showing parameters of the dataset (Path panel->Info button)
• Added ROI mode to the Make snapshot dialog (Menu->File->Make Snapshot...)
• Added ROI mode to the Make video dialog (Menu->File->Make Movie...)
• Added use of system TEMP folder to store im_browser parameters as a second choice, when c:\temp is not available for writing (settings are stored in im_browser.mat)
• Added PNG format to Save image as dialog
• the Adjust Display window does not show histogram for modified gamma, but shows histogram for all color channels
• Combine as color channels - added to the popup menu in the file listing of the Directory contents panel
• Updated saving of multichannel images in Amira Mesh format
• Updated the color table in the View settings panel
• Replaced '\t' character in the ImageDescription field to the '|'

Version 0.9910 06.11.2013
• Added short release notes in the automatic update
• Added LUT (look-up table) for defining a custom set of colors for color channels
• Added copy color channel: Menu->Image->Color Channels->Copy channel...
• Added copy color channel: Menu->Image->Color Channels->Invert channel...
• Updated Preferences dialog: Menu->File->Preferences
• Moved some functions from the class to external files
• Renamed cropImage to cropDataset function in the imageData class

Version 0.9909 18.10.2013
• Added tooltips to some toolbar buttons
• Added rehash of files after using web-update of im_browser
• Added TIF to bio-formats file filter
• Added synchronization of the Material list boxes in the segmentation panel (Materials List->right mouse button->Sync all lists)
• Updated un-focusing behavior with some edit and combo boxes
• Updated colors of the Preferences dialog
• Fixed import/export img_info containers.Map class object with description of the dataset. The img_info map is a handle so it has to be reinitialized: img_info_new = containers.Map(keys(img_info), values(img_info))

Version 0.9908 17.10.2013
• Added preservation of the bounding box during alignment of stacks
• Fixed bug of the bounding box settings (introduced in 0.9904)
• Minor improvements

Version 0.9907 14.10.2013
• Fixed resizing of the slider responsible for change of slices

Version 0.9906 10.10.2013
• Added 3D Frangi filter (Mask Generators->Frangi filter)

Version 0.9905 07.10.2013
• Added selection of the first and last points for rendering videos (Menu->File->Save as video...)

Version 0.9904 03.10.2013
• Taken into account stage rotation bias when calculating the bounding box (rotation stage bias field in the Menu->Dataset->Bounding Box dialog)

Version 0.9903 02.10.2013
• Fixed the memory clearance after disabling of the Selection mode in the preference dialog for the uint6 models

Version 0.9902 24.09.2013
• Added fast pan mode, for fast navigation when showing large XY images (Toolbar->Fast pan mode)
• Fixed in the Menu->Selection->Mask and Mask->Selection

Version 0.9901 18.09.2013
• Added ultimate erosion
• Implementated automatic check for updates
• Fixed modification of ROI for large images